Evidence map›Paper›PMID 40719377›Full record

ArticleNucleus (Austin, Tex.)2025

Constitutive heterochromatin controls nuclear mechanics, morphology, and integrity through H3K9me3 mediated chromocenter compaction.

Gianna Manning, Andy Li, Nebiyat Eskndir, Marilena Currey, Andrew D Stephens

Abstract read
In one paragraph

Article in Nucleus (Austin, Tex.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Mechanical regulation of cell memory.Nature structural & molecular biology · 2026
    Review
  3. Review
  4. Article
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  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. How the chromatin landscape influences nuclear morphology.Frontiers in cell and developmental biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Gianna ManningBiology Department, University of Massachusetts Amherst, Amherst, MA, USA.
Andy LiBiology Department, University of Massachusetts Amherst, Amherst, MA, USA.
Nebiyat EskndirBiology Department, University of Massachusetts Amherst, Amherst, MA, USA.
Marilena CurreyBiology Department, University of Massachusetts Amherst, Amherst, MA, USA.
Andrew D StephensBiology Department, University of Massachusetts Amherst, Amherst, MA, USA.ORCID 0000-0001-5474-7845

Funding

Center for 3D Structure and Physics of the GenomeUM1HG011536 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI DEKKER, JOB, MIRNY, LEONID A · 2020 to 2024
$11.8M
Role of chromatin mechanics in nuclear shape and integrityR35GM154928 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI Andrew Daniel Stephens · 2024 to 2026
$1.2M
NHGRI NIH HHS UM1 HG011536NIGMS NIH HHS R35 GM154928
6 · The paper itself

Abstract

Aberrant nuclear morphology is a hallmark of human disease and causes nuclear dysfunction. Perturbed nuclear mechanics via reduced heterochromatin weakens the nucleus resulting in nuclear blebbing and rupture. While the role of heterochromatin is known, the separate roles of constitutive heterochromatin methylation states remains elusive. Using MEF and HT1080 cells, we isolated the individual contribution of constitutive heterochromatin H3K9 methylation states through histone methyltransferase inhibitors. Inhibition of SUV39H1 via Chaetocin downregulates H3K9 trimethylation (me3), while inhibition of G9a via BIX01294 downregulates H3K9 dimethylation (me2). Overall, the loss of H3K9me3 increased nuclear blebbing and rupture in interphase nuclei due to decreased nuclear rigidity from decompaction of chromocenters. Oppositely, loss of H3K9me2 decreased nuclear blebbing and rupture with increased nuclear rigidity and more compact chromocenters. We show that facultative heterochromatin and HP1α are non-essential for chromocenter compaction. Constitutive heterochromatin provides essential nuclear mechanical support to maintain nuclear shape and integrity through chromocenter compaction.

Indexed as

Cell NucleusHeterochromatinHistonesAnimalsAzepinesChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneHistone-Lysine N-MethyltransferaseHumansMethylationMethyltransferasesMiceNitrobenzenesPiperazinesQuinazolinesRepressor ProteinsAzepinesBIX 01294CBX5 protein, humanchaetocinChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneHeterochromatinHistone-Lysine N-MethyltransferaseHistonesMethyltransferasesNitrobenzenesPiperazinesQuinazolinesRepressor ProteinsSUV39H1 protein, humanChromocenterheterochromatinnuclear blebbingnuclear mechanicsnuclear structure

Identifiers

PMID40719377
PMCPMC11988277

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.