Evidence map›Paper›PMID 40716777›Full record

ArticleNucleic acids research2025

Rapid depletion and super-resolution microscopy reveal dual roles of SRSF5 in coordinating nuclear speckle-paraspeckle crosstalk during cellular stress.

Ellen Kazumi Okuda, Laurell Fridolin Kessler, Benjamin Arnold, Ricarda J Riegger, Maria Clara Hernández Cañás, Ewelina Zebrowska, Cem Bakisoglu, Mara Rudigier, Christine Krost, Helder Y Nagasse and 7 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cryosectioning-enhanced super-resolution microscopy for single-protein imaging across cells and tissues.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Ellen Kazumi OkudaInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.ORCID 0009-0008-7704-2125
Laurell Fridolin KesslerInstitute of Physical and Theoretical Chemistry, Goethe University, 60438 Frankfurt am Main, Germany.
Benjamin ArnoldInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.ORCID 0000-0002-3608-861X
Ricarda J RieggerInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.ORCID 0009-0009-3647-9256
Maria Clara Hernández CañásInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.ORCID 0000-0002-3261-8636
Ewelina ZebrowskaInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.ORCID 0000-0003-0542-4964
Cem BakisogluInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.
Mara RudigierInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.
Christine KrostInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.
Helder Y NagasseInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.ORCID 0000-0001-7897-3556
Jan Keiten-SchmitzInstitute of Biochemistry II, Goethe University Frankfurt, 60528 Frankfurt am Main, Germany.ORCID 0000-0002-9492-9413
Stefan MüllerInstitute of Biochemistry II, Goethe University Frankfurt, 60528 Frankfurt am Main, Germany.ORCID 0000-0002-8792-7700
David StanekInstitute of Molecular Genetics (IMG), CAS, 142 00 Prague, Czech Republic.ORCID 0000-0002-5865-175X
Dorothee DormannInstitute for Molecular Physiology, Johannes Gutenberg University, 55128 Mainz, Germany.ORCID 0000-0002-9260-2775
Kathi ZarnackInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.ORCID 0000-0003-3527-3378
Mike HeilemannInstitute of Physical and Theoretical Chemistry, Goethe University, 60438 Frankfurt am Main, Germany.ORCID 0000-0002-9821-3578
Michaela Müller-McNicollInstitute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.ORCID 0000-0002-7174-8310

Funding

CAPESDAADDFG 161 793 742DFG 403 584 255DFG 442 698 351DFG 465 470 262Goethe UniversityHessian Ministry for Science and Arts
6 · The paper itself

Abstract

Nuclear speckles (NS) and paraspeckles (PS) are adjacent yet distinct nuclear condensates that undergo stress-induced reorganization. Here, we identify a dual role for the splicing factor SRSF5 in coordinating the crosstalk between both condensates. Super-resolution imaging shows that SRSF5, while enriched in NS, also overlaps with the shell of a subset of PS. SRSF5 binds purine-rich sequences at the 5' end of NEAT1_2 promoting its alignment to PS shells and the formation of large PS cluster during stress. We propose that SRSF5 binding occurs transiently during PS maturation and must later be removed from NEAT1_2 by nuclear helicases. Inhibition of this remodeling by rocaglamide A, which locks helicases onto purine-rich RNA leads to the aberrant fusion of PS and NS, which can be partially rescued by acute SRSF5 depletion. Surprisingly, while short-term SRSF5 loss impairs PS formation, prolonged depletion activates a feedback loop involving intron retention and premature polyadenylation of TARDBP, reduction of TDP-43 levels and NEAT1_2 isoform switching, ultimately restoring PS clusters. Our findings reveal that SRSF5 serves both architectural and regulatory roles in PS biogenesis and that helicase-mediated remodeling is essential to maintain PS identity and function under stress. These insights uncover fundamental principles of nuclear body dynamics.

Indexed as

Cell NucleusSerine-Arginine Splicing FactorsStress, PhysiologicalHeLa CellsHumansRNA, Long NoncodingNEAT1 long non-coding RNA, humanRNA, Long NoncodingSerine-Arginine Splicing Factors

Identifiers

PMID40716777
PMCPMC13223733

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.