Evidence map›Paper›PMID 40716775›Full record

ArticleNucleic acids research2025

Unleashing high trans-substrate cleavage kinetics of Cas12a for nucleic acid diagnostics.

Eric A Nalefski, Samantha Hedley, Karunya Rajaraman, Remy M Kooistra, Ishira Parikh, Selma Sinan, Ilya J Finklestein, Damian Madan

Erratum issuedAbstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Molecular mechanisms and biotechnology applications of CRISPR-Cas12a.Nature reviews. Molecular cell biology · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Eric A NalefskiGlobal Health Labs, Inc., Bellevue, WA 98007, United States.ORCID 0000-0001-6350-7501
Samantha HedleyGlobal Health Labs, Inc., Bellevue, WA 98007, United States.
Karunya RajaramanGlobal Health Labs, Inc., Bellevue, WA 98007, United States.
Remy M KooistraGlobal Health Labs, Inc., Bellevue, WA 98007, United States.
Ishira ParikhGlobal Health Labs, Inc., Bellevue, WA 98007, United States.
Selma SinanDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, United States.ORCID 0000-0002-0632-3658
Ilya J FinklesteinDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, United States.ORCID 0000-0002-9371-2431
Damian MadanGlobal Health Labs, Inc., Bellevue, WA 98007, United States.ORCID 0000-0003-2977-0191

Funding

College of Natural Sciences CatalystGlobal Health LabsWelch Foundation F-1808
6 · The paper itself

Abstract

CRISPR (clustered regularly interspaced short palindromic repeats)-based nucleic acid diagnostics enable rapid, sensitive pathogen detection. Cas12a is frequently used in these assays because target-activated trans cleavage of a reporter molecule generates an easily detectable signal. However, variable activity across assays suggests that the catalytic potential of Cas12a has been limited via unknown mechanisms. Here, we show that Cas12a trans-nuclease activity is auto-inhibited by long PAM-proximal DNA (>120 bp) following cis-cleavage of targets. Short targets (<100 bp), optimized trans cleavage substrates, and low salt buffers unleash high catalytic efficiency (≈108 M-1 s-1) and turnover (≈1 s-1) across Cas12a orthologs. Pooling multiple Cas12a ribonucleoproteins (RNPs) targeting clustered protospacers overcomes cis-cleavage auto-inhibition, further boosting sensitivity. Optimized CRISPR RNA pools enable sub-femtomolar sensitivity for target detection without any pre-amplification. This mechanistic insight and mitigation strategy broaden the application of CRISPR-Cas enzymes for nucleic acid diagnostics.

Indexed as

Bacterial ProteinsCRISPR-Associated ProteinsCRISPR-Cas SystemsEndodeoxyribonucleasesNucleic AcidsClustered Regularly Interspaced Short Palindromic RepeatsDNAKineticsRibonucleoproteinsRNA, Guide, CRISPR-Cas SystemsSubstrate SpecificityBacterial ProteinsCas12a proteinCRISPR-Associated ProteinsDNAEndodeoxyribonucleasesNucleic AcidsRibonucleoproteinsRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID40716775
PMCPMC12604663

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.