Evidence map›Paper›PMID 40715728›Full record

ReviewNature methods2025

From 2D to 3D and beyond: the evolution and impact of in vitro tumor models in cancer research.

Gat Rauner, Piyush B Gupta, Charlotte Kuperwasser

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Biomimetic Scaffold-Based 3D Models for Decoding Cancer Biology and Advancing Therapy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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  6. Research progress on the chemical and pharmacological effects ofInternational journal of molecular medicine · 2026
    Review
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  14. Article
  15. Article
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  17. Article
  18. Why in vivo models of disease remain indispensable.Disease models & mechanisms · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Gat RaunerDepartment of Developmental, Molecular & Chemical Biology, Tufts Graduate School of Biomedical Sciences, Boston, MA, USA.
Piyush B GuptaDepartment of Developmental, Molecular & Chemical Biology, Tufts Graduate School of Biomedical Sciences, Boston, MA, USA.
Charlotte KuperwasserDepartment of Developmental, Molecular & Chemical Biology, Tufts Graduate School of Biomedical Sciences, Boston, MA, USA. charlotte.kuperwasser@tufts.edu.ORCID http://orcid.org/0000-0001-7913-9619

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In vitro tumor models are essential tools for cancer research, offering key insights into not only tumor biology but also therapeutic responses. The transition from traditional two-dimensional to three-dimensional organoid systems marks a paradigm shift in cancer modeling. Although two-dimensional models have been instrumental in elucidating fundamental molecular and genetic mechanisms, they fail to accurately replicate the intricate three-dimensional architecture and dynamic microenvironment characteristic of human tumors. Here we outline how advanced organoid technologies now enable more faithful recapitulation of tumor heterogeneity that better mimic native tissue mechanics and biochemistry. We discuss emerging methods, including air-liquid interface cultures, microfluidic tumor-on-a-chip devices and high-content imaging integrated with machine learning, which collectively address longstanding challenges such as matrix variability and the limited incorporation of immune and vascular elements. These innovations promise to enhance reproducibility and scalability while providing unprecedented insights into tumor biology, cancer progression and therapeutic strategies.

Indexed as

Models, BiologicalNeoplasmsAnimalsCell Culture TechniquesHumansLab-On-A-Chip DevicesMachine LearningOrganoidsTumor Microenvironment

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.