Evidence map›Paper›PMID 40715273›Full record

ArticleScientific reports2025

Polymerase spiral reaction assay for rapid visual detection of Mycobacterium avium subsp. paratuberculosis in fecal samples.

Vinod Kumar Singh, Vikas Gupta, Chayanika Das, Amit Kumar, Sharad K Yadav

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Rapid and Simple Detection ofPathogens (Basel, Switzerland) · 2025
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Vinod Kumar SinghDepartment of Veterinary Microbiology, College of Veterinary Science and Animal Husbandry, DUVASU, Mathura, U.P, India. vet.vinodsingh@gmail.com.ORCID http://orcid.org/0000-0002-9229-5162
Vikas GuptaCCS-National Institute of Animal Health, Baghpat, U.P, India.
Chayanika DasDivision of Veterinary Microbiology, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, U.P, India.
Amit KumarDivision of Animal Biotechnology, College of Biotechnology, SVPUAT, Meerut, U.P., India.
Sharad K YadavDepartment of Veterinary Microbiology, College of Veterinary Science and Animal Husbandry, DUVASU, Mathura, U.P, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A rapid, sensitive, and specific visual detection assay for Mycobacterium avium subsp. paratuberculosis (MAP) was developed and optimized using a polymerase spiral reaction (PSR) method. A pair of primers was designed targeting MAP specific sequence of IS900 putative transposes (p43) gene, and PSR results were assessed using agarose gel electrophoresis and colour change with SYBR Green-I dye. The assay was optimized using water bath and the optimum reaction time and temperature for MAP-PSR were 60 min and 64 °C, respectively. The sign of target amplification can be visualized by naked eyes as SYBR Green-I change its colour due to intercalation with amplified products. The developed assay demonstrated that the primers specifically detected MAP and showed no cross-reaction with other common Mycobacterium. The sensitivity of the PSR assay for MAP detection was 122 fg or ~ 23 copy number of the template. The MAP-PSR assay was also evaluated using 100 clinical samples, and a total 59 samples were found positive. When same samples were tested by conventional PCR, 50 samples were found positive, and all PCR positive clinical samples were found positive by MAP-PSR too. In conclusion the developed MAP-PSR assay is simple, rapid, specific, and sensitive, and thereby very suitable for application and promotion in the field and resource limited laboratories.

Indexed as

FecesMycobacterium avium subsp. paratuberculosisParatuberculosisPolymerase Chain ReactionAnimalsCattleDNA, BacterialDNA PrimersSensitivity and SpecificityDNA, BacterialDNA PrimersFaecal samplesIS900 (p43gene)Johne’s diseaseMycobacterium avium subsp paratuberculosisPolymerase spiral reaction (PSR) assay

Identifiers

PMID40715273
PMCPMC12297387

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.