Evidence map›Paper›PMID 40713781›Full record

ArticleProtein science : a publication of the Protein Society2025

Protease mimicry: Dissecting the ester bond crosslinking mechanics in bacterial adhesin proteins.

Yuliana Yosaatmadja, Vanessa Ung, Xinlu Liu, Yixuan Zhao, Julia K Wardega, Aria Shetty, Sophie Schoensee, Ivanhoe K H Leung, Jeremy R Keown, David C Goldstone and 4 more

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yuliana YosaatmadjaSchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.ORCID 0000-0003-2875-5993
Vanessa UngSchool of Chemical Sciences, The University of Auckland, Auckland, New Zealand.ORCID 0000-0002-9494-2837
Xinlu LiuSchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.
Yixuan ZhaoSchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.
Julia K WardegaSchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.
Aria ShettySchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.
Sophie SchoenseeSchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.
Ivanhoe K H LeungMaurice Wilkins Centre for Molecular Biodiscovery, The University of Auckland, Auckland, New Zealand.ORCID 0000-0003-0633-6771
Jeremy R KeownSchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.ORCID 0000-0003-0159-9257
David C GoldstoneSchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.ORCID 0000-0003-0069-9408
Edward N BakerSchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.ORCID 0000-0003-2456-7661
Paul G YoungSchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.
Davide MercadanteMaurice Wilkins Centre for Molecular Biodiscovery, The University of Auckland, Auckland, New Zealand.ORCID 0000-0001-6792-7706
Christopher J SquireSchool of Biological Sciences, The University of Auckland, Auckland, New Zealand.ORCID 0000-0001-9212-0461

Funding

Marsden Fund UOA1421
6 · The paper itself

Abstract

The ester bond crosslink discovered within bacterial adhesin proteins offers a captivating insight into the convergent evolution of enzyme-like machinery. Crystal structures reveal a putative catalytic triad comprising an acid-base-nucleophile combination and an oxyanion-like site that suggests a serine protease-like mechanism drives the crosslinking process. We now provide confirmation of the mechanism, revealing functional catalytic dyads or triads, and the recapitulation of protease machinery from a Pseudomonas bacterium and a human cytomegalovirus related only by convergent evolution. Molecular dynamics simulations suggest how a conservative threonine-to-serine mutation of the nucleophile induces hydrolysis and eliminates the ester bond crosslink. Collectively, our structural, functional, and computational efforts detail the molecular intricacies of intramolecular ester bond formation and underscore the convergent evolutionary adaptations of bacteria in exploiting enzyme-like machinery to protect essential adhesin proteins from the mechanical, biological, and chemical hostilities of their replicative niche.

Indexed as

Adhesins, BacterialEstersHumansModels, MolecularMolecular Dynamics SimulationAdhesins, BacterialEstersbacterial adhesin domainconvergent evolutionenzyme mechanismester bondimmunoglobin‐like domainintramolecular crosslinkingserine protease

Identifiers

PMID40713781
PMCPMC12679949

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.