Evidence map›Paper›PMID 40712587›Full record

ArticleMolecular cell2025

Structural basis for promoter recognition and transcription factor binding and release in human mitochondria.

Karl Herbine, Ashok R Nayak, Angelica Zamudio-Ochoa, Dmitry Temiakov

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. TFAM organizes DNA into compact higher order structures.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Karl HerbineDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA.
Ashok R NayakDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA.
Angelica Zamudio-OchoaDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA.
Dmitry TemiakovDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA. Electronic address: dmitry.temiakov@jefferson.edu.

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL P SILVER · 1995 to 2026
$94.8M
NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
NCCAT: National Center for CryoEM Access and TrainingR24GM154192 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI EDWARD T ENG, Jeffrey S Kieft · 2024 to 2026
$21.0M
Molecular Mechanisms of Mitochondrial Transcription and ReplicationR35GM131832 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI Dmitry Temiakov · 2019 to 2026
$4.3M
A New Cryo-Transmission Electron Microscope at Thomas Jefferson UniversityS10OD030457 · OD · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2022 to 2022
$2.0M
NCI NIH HHS P30 CA056036NIGMS NIH HHS R24 GM154192NIGMS NIH HHS R35 GM131832NIGMS NIH HHS U24 GM129539NIH HHS S10 OD030457
6 · The paper itself

Abstract

Transcription in human mitochondria is driven by a core apparatus consisting of a Pol A family RNA polymerase (mtRNAP), the initiation factors TFAM and TFB2M, and the elongation factor TEFM. While earlier structures of initiation and elongation complexes provided valuable snapshots, they represent isolated stages of a highly dynamic and multistep process. Critical aspects of mitochondrial transcription-such as DNA recognition and melting, promoter escape, and the release of initiation factors-remain poorly understood. Here, we present a series of cryoelectron microscopy (cryo-EM) structures that capture the transcription complex as it transitions from the initial open promoter complex to the processive elongation complex through intermediate stages. Our data reveal new, previously unidentified determinants of promoter specificity: the sequential disengagement of mtRNAP from TFAM and the promoter, the release of TFB2M, and the recruitment of TEFM. Together, these findings provide a detailed molecular mechanism underlying transcription in human mitochondria.

Indexed as

DNA-Binding ProteinsDNA, MitochondrialMitochondriaMitochondrial ProteinsPromoter Regions, GeneticTranscription FactorsBinding SitesCryoelectron MicroscopyDNA-Directed RNA PolymerasesHumansMethyltransferasesModels, MolecularProtein BindingTranscriptional Elongation FactorsTranscription, GeneticDNA-Binding ProteinsDNA-Directed RNA PolymerasesDNA, MitochondrialMethyltransferasesMitochondrial ProteinsTFAM protein, humanTFB2M protein, humanTranscriptional Elongation FactorsTranscription Factorsmitochondrial transcriptionmtRNAPPOLRMTpromoterRNA polymeraseTEFMTFAMTFB2Mtranscription-replication switch

Identifiers

PMID40712587
PMCPMC12313153

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.