Evidence map›Paper›PMID 40711919›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Bivalent interaction through an intrinsically disordered linker promotes transcription activation complex assembly in Notch signaling.

Cyril Cook, Kristen M Ramsey, Doug Barrick

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Cyril CookThomas C. Jenkins Department of Biophysics, The Johns Hopkins University, Baltimore, MD 21218.ORCID 0000-0003-1518-1345
Kristen M RamseyDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, CT 06269.
Doug BarrickThomas C. Jenkins Department of Biophysics, The Johns Hopkins University, Baltimore, MD 21218.ORCID 0000-0001-7291-1389

Funding

PROGRAM IN MOLECULAR BIOPHYSICST32GM008403 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BARRICK, DOUGLAS E. · 1990 to 2019
$13.5M
REPEAT-PROTEINS;STABILITY, FOLDING KINETICS &EVOLUTIONR01GM068462 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BARRICK, DOUGLAS E. · 2005 to 2025
$6.3M
Structure And Mechanism In Intracellular Notch SignalingR01GM060001 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BARRICK, DOUGLAS E. · 2001 to 2015
$3.6M
Thermodynamic and Functional Analysis of Consensus and Covariance in Proteins, and Bivalent Notch ComplexesR35GM158123 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI DOUGLAS E. BARRICK · 2025 to 2026
$483k
The Identity of the Notch Ankyrin Repeat Domain as a Determinant of Isoform-Specific Notch SignalingF32CA260117 · NCI · JOHNS HOPKINS UNIVERSITY · PI RAMSEY, KRISTEN MICHELLE · 2021 to 2023
$210k
HHS | National Institutes of Health (NIH) 1R01-GM068462HHS | National Institutes of Health (NIH) F32CA260117HHS | National Institutes of Health (NIH) R01-GM60001HHS | National Institutes of Health (NIH) T32GM008403NCI NIH HHS F32 CA260117NIGMS NIH HHS R01 GM060001NIGMS NIH HHS R01 GM068462NIGMS NIH HHS R35 GM158123NIGMS NIH HHS T32 GM008403
6 · The paper itself

Abstract

The Notch signaling pathway regulates cellular differentiation by activating transcription through an unusual heterotrimeric complex comprising the Notch receptor's intracellular domain (NICD), the DNA-binding protein CSL, and the coactivator MAML. NICD has two binding sites for CSL, a short motif in the RAM region and an ankyrin domain (ANK), connected by an intrinsically disordered linker and which form a bivalent ternary complex with CSL and MAML. Although bivalency is required for maximal transcription activation, the energetic contributions of bivalency and heterotrimer formation within this essential complex are unknown. To elucidate the energetics of bivalency, we first determine the free energy of the CSL-ANK-MAML heterotrimer, using isothermal titration calorimetry and developing an obligate heterotrimer model to analyze the data. By comparing this heterotrimerization reaction with binding reactions involving different regions of RAMANK, we determine the energetic contribution of bivalency to heterotrimer assembly. We show that bivalency through the disordered linker increases the effective concentration of ANK, and that the bivalent interaction enhances occupancy of RAM and ANK at their binding sites on CSL by about three orders of magnitude. By redefining the standard state to a lower, more physiological protein concentration, we reveal the importance of the RAMANK intrinsically disordered linker for assembly of the Notch transcription activation complex. This work provides a framework whereby the energetic contributions of intrinsically disordered linkers to higher-order multivalent assembly may be analyzed.

Indexed as

DNA-Binding ProteinsImmunoglobulin J Recombination Signal Sequence-Binding ProteinIntrinsically Disordered ProteinsReceptors, NotchSignal TransductionTranscriptional ActivationTranscription FactorsBinding SitesHumansProtein BindingDNA-Binding ProteinsImmunoglobulin J Recombination Signal Sequence-Binding ProteinIntrinsically Disordered ProteinsMAML1 protein, humanReceptors, NotchTranscription Factorsbivalent interactionheterotrimer formationintrinsically disordered linkerisothermal titration calorimetryNotch signaling

Identifiers

PMID40711919
PMCPMC12318201

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.