Evidence map›Paper›PMID 40711816›Full record

ArticleThe Journal of general virology2025

Virus taxonomy proposal summaries: a searchable and citable resource to disseminate virus taxonomy advances.

Richard Mayne, Peter Simmonds, Donald B Smith, Evelien M Adriaenssens, Elliot J Lefkowitz, Hanna M Oksanen, Francisco Murilo Zerbini, Poliane Alfenas-Zerbini, Frank O Aylward, Juliana Freitas-Astúa and 16 more

Abstract readEditorial
In one paragraph

Article in The Journal of general virology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Richard MayneNuffield Department of Medicine, University of Oxford, Peter Medawar Building, South Parks Road, Oxford OX1 3SY, UK.
Peter SimmondsNuffield Department of Medicine, University of Oxford, Peter Medawar Building, South Parks Road, Oxford OX1 3SY, UK.
Donald B SmithNuffield Department of Medicine, University of Oxford, Peter Medawar Building, South Parks Road, Oxford OX1 3SY, UK.
Evelien M AdriaenssensQuadram Institute Bioscience, Norwich Research Park, Norwich NR4 7UQ, UK.
Elliot J LefkowitzDepartment of Microbiology, University of Alabama at Birmingham, BBRB 276, 845 19th St South, Birmingham, AL 35294-2170, USA.
Hanna M OksanenMolecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9, 00014 Helsinki, Finland.
Francisco Murilo ZerbiniDepartamento de Fitopatologia/BIOAGRO, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil.
Poliane Alfenas-ZerbiniDepartamento de Microbiologia, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil.
Frank O AylwardDepartment of Biological Sciences, Virginia Tech, Blacksburg, VA, USA.
Juliana Freitas-AstúaEmbrapa Cassava and Fruits, Cruz das Almas, Bahia, 44380-000, Brazil.
R Curtis HendricksonDepartment of Microbiology, University of Alabama at Birmingham, BBRB 276, 845 19th St South, Birmingham, AL 35294-2170, USA.
Holly R HughesCenters for Disease Control and Prevention, Fort Collins, Colorado, USA.
Mart KrupovicInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Archaeal Virology Unit, 25 rue du Dr Roux, 75015 Paris, France.
Jens H KuhnIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, B-8200 Research Plaza, Fort Detrick, Frederick, MD 21702, USA.
Małgorzata ŁobockaInstitute of Biochemistry and Biophysics of the Polish Academy of Sciences, 02-106 Warsaw, Poland.
Arcady R MushegianDivision of Molecular and Cellular Biosciences, National Science Foundation, 2415 Eisenhower Avenue, Alexandria, VA 22314, USA.
Judit PenzesInstitute for Quantitative Biomedicine, Rutgers University, Piscataway, New Jersey, USA.
Alejandro Reyes MuñozDepartamento de Ciencias Biológicas, Universidad de los Andes, Bogotá, Colombia.
David L RobertsonMRC-University of Glasgow Centre for Virus Research, Sir Michael Stoker Building, 464 Bearsden Road, Glasgow G61 1QH, UK.
Simon RouxDepartment of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Luisa RubinoConsiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Sede Secondaria di Bari, Via Amendola 165/A, 70126 Bari, Italy.
Sead SabanadzovicDepartment of Agricultural Science and Plant Protection, Mississippi State University, Mississippi State, MS 39762, USA.
Nobuhiro SuzukiInstitute of Plant Science and Resources, Okayama University, Kurashiki, Okayama 710-0046, Japan.
Dann TurnerMolecular Biology, University of the West of England, Bristol, UK.
Koenraad Van DoorslaerDepartment of Immunobiology, School of Animal and Comparative Biomedical Sciences, BIO5 Institute, University of Arizona Cancer Center, Tucson, AZ 85721, USA.
Arvind VarsaniThe Biodesign Center for Fundamental and Applied Microbiomics, School of Life Sciences, Center for Evolution and Medicine, Arizona State University, Tempe, AZ 85287-4701, USA.

Funding

Virus Taxonomy: A Community Knowledgebase Supporting Virus ResearchU24AI162625 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Elliot J. Lefkowitz · 2021 to 2026
$3.0M
Coevolutionary Dynamics and Gene Exchange Between Nucleo-Cytoplasmic Large DNA Viruses and EukaryotesR35GM147290 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI Frank O'Neill Aylward · 2022 to 2026
$1.9M
NIAID NIH HHS U24 AI162625NIGMS NIH HHS R35 GM147290
6 · The paper itself

Abstract

Taxonomic classification of cellular organisms requires the publication of descriptions and proposed names of species and the deposition of specimens. Virus taxonomy is developed through a different system of annual submission of formal taxonomy proposals (TPs) that can be submitted by anyone but are typically prepared by a study group appointed by the International Committee on Taxonomy of Viruses (ICTV) and consisting of experts on a particular group of viruses. These are initially evaluated by an expert subcommittee and by the executive committee (EC) of the ICTV. EC-approved TPs are then submitted for evaluation and a ratification vote by the wider ICTV membership. Following ratification, the new taxonomy is annually updated in the Master Species List, associated databases and bioinformatic resources. The process is consistent, creates traceability in assignments and supports a fully evaluated, hierarchical classification and nomenclature of all taxonomic ranks from species to realms. The structure also facilitates large-scale and coordinated changes to virus taxonomy, such as the recent introduction of a binomial species nomenclature.TPs are available on the ICTV website after ratification, but they are not indexed in bibliographic databases and are not easily cited. Authors of TPs do not receive citation credit for adopted proposals, and their voluntary contributions are largely invisible in the published literature. For greater visibility of TPs and their authors, the ICTV will commence the annual publication of summaries of all TPs from each ICTV subcommittee. These summaries will provide a searchable compendium of all annual taxonomy changes and additions as well as direct links to the Master Species List and other ICTV bioinformatic resources. Their publication will provide due credit and citations for their authors, form the basis for disseminating taxonomy decisions and promote greater visibility and accessibility to taxonomy changes for the virology community.

Indexed as

ClassificationVirusesComputational BiologyTerminology as TopicICTVmaster species listtaxonomy proposalvirus taxonomy

Identifiers

PMID40711816
PMCPMC12451635

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.