Evidence map›Paper›PMID 40711564›Full record

ArticleThe journal of physical chemistry. A2025

The Excess Polarizability of Single-Stranded DNA Molecules in Solution: A Linear Response Theory in the Polarizable Continuum Model with an Application to Biosensing.

Roberto Cammi

Abstract read
In one paragraph

Article in The journal of physical chemistry. A, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Roberto CammiDipartimento di Scienze Chimiche, della Vita e della Sostenibilitá Ambientale, Universitá degli Studi di Parma, Parco Area delle Scienze 11/a, Parma 43124, Italy.ORCID 0000-0002-7026-7750

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The excess polarizability of a molecular solute describes the interaction energy between a molecular solute and a macroscopic optical field that polarizes the solute itself, as compared to the same interaction process involving solvent molecules. The excess polarizability is involved in the physical mechanism that triggers the signals in the whispering gallery mode (WGM), a biosensing technique (denoted as WGM) for detecting biomolecules. The interpretation of the WGM signals requires information on the excess polarizability of the biomolecule of interest, which, until now, could be obtained from experimental measurements of the refractive index of solutions. Here, we present a quantum chemical theory for determining the excess polarizability using the effective linear response theory in the polarizable continuum model (PCM-eLRT) for solvation. As a proof-of-concept, the PCM-eLRT is applied at the TD-DFT level of electronic structure methodology to the calculation of the excess polarizability of single-stranded DNA molecules constituted up to 14-mer oligonucleotides, showing remarkable agreement with available experimental data.

Indexed as

Biosensing TechniquesDNA, Single-StrandedDensity Functional TheoryQuantum TheorySolutionsDNA, Single-StrandedSolutions

Identifiers

PMID40711564
PMCPMC12337146

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.