Evidence map›Paper›PMID 40709742›Full record

ArticleJournal of biophotonics2025

Deep Learning for Autonomous Surgical Guidance Using 3-Dimensional Images From Forward-Viewing Endoscopic Optical Coherence Tomography.

Sinaro Ly, Adrien Badré, Parker Brandt, Chen Wang, Paul Calle, Justin Reynolds, Qinghao Zhang, Kar-Ming Fung, Haoyang Cui, Zhongxin Yu and 5 more

Abstract read
In one paragraph

Article in Journal of biophotonics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Sinaro LySchool of Computer Science, University of Oklahoma, Norman, Oklahoma, USA.ORCID 0009-0002-5269-9717
Adrien BadréSchool of Computer Science, University of Oklahoma, Norman, Oklahoma, USA.
Parker BrandtSchool of Computer Science, University of Oklahoma, Norman, Oklahoma, USA.
Chen WangStephenson School of Biomedical Engineering, University of Oklahoma, Norman, Oklahoma, USA.ORCID 0000-0003-4645-3227
Paul CalleSchool of Computer Science, University of Oklahoma, Norman, Oklahoma, USA.ORCID 0009-0000-1849-4481
Justin ReynoldsSchool of Computer Science, University of Oklahoma, Norman, Oklahoma, USA.
Qinghao ZhangStephenson School of Biomedical Engineering, University of Oklahoma, Norman, Oklahoma, USA.ORCID 0009-0005-2906-6315
Kar-Ming FungDepartment of Pathology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Haoyang CuiSchool of Computer Science, University of Oklahoma, Norman, Oklahoma, USA.
Zhongxin YuDepartment of Pathology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Sanjay G PatelDepartment of Urology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Yunlong LiuSchool of Computer Science, University of Oklahoma, Norman, Oklahoma, USA.
Nathan A BradleyDepartment of Urology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Qinggong TangStephenson School of Biomedical Engineering, University of Oklahoma, Norman, Oklahoma, USA.
Chongle PanSchool of Computer Science, University of Oklahoma, Norman, Oklahoma, USA.

Funding

Tissue Pathology Shared ResourceP30CA225520 · NCI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI ROBERT S. MANNEL · 2018 to 2026
$27.1M
TUMOR RESISTANCE MECHANISMS TO ANTI-VEGF THERAPY IN PROSTATE CANCER (Sukyung Woo)P20GM103639 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI DHANASEKARAN, DANNY N. · 2012 to 2022
$21.3M
Use of 3D Quantitative Optical Methods to Optimize Mebendazole Treatment of Ovarian CancerP20GM135009 · NIGMS · UNIVERSITY OF OKLAHOMA · PI Javier Antonio Jo · 2022 to 2026
$13.6M
Mentoring Translational Cancer Research in OklahomaP30GM154635 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI Muralidharan Jayaraman · 2024 to 2026
$4.3M
Automatic Wide-Field Optical Coherence Tomography for Assessment of Transplant Kidney ViabilityR01DK133717 · NIDDK · UNIVERSITY OF MASSACHUSETTS AMHERST · PI POTTER, STEVEN, TANG, QINGGONG · 2022 to 2025
$2.5M
National Science Foundation 2238648National Science Foundation OIA-2132161NCI NIH HHS P30 CA225520NCI NIH HHS P30CA225520NIDDK NIH HHS R01 DK133717NIDDK NIH HHS R01DK133717NIGMS NIH HHS P20 GM103639NIGMS NIH HHS P20GM103639NIGMS NIH HHS P20 GM135009NIGMS NIH HHS P20GM135009NIGMS NIH HHS P30 GM154635Oklahoma Center for the Advancement of Science and Technology HR23-071The University of Oklahoma Libraries' Open Access Fund
6 · The paper itself

Abstract

A three-dimensional convolutional neural network (3D-CNN) was developed for the analysis of volumetric optical coherence tomography (OCT) images to enhance endoscopic guidance during percutaneous nephrostomy. The model was performance-benchmarked using a 10-fold nested cross-validation procedure and achieved an average test accuracy of 90.57% across a dataset of 10 porcine kidneys. This performance significantly exceeded that of 2D-CNN models that attained average test accuracies ranging from 85.63% to 88.22% using 1, 10, or 100 radial sections extracted from the 3D OCT volumes. The 3D-CNN (~12 million parameters) was benchmarked against three state-of-the-art volumetric architectures: the 3D Vision Transformer (3D-ViT, ~45 million parameters), 3D-DenseNet121 (~12 million parameters), and the Multi-plane and Multi-slice Transformer (M3T, ~29 million parameters). While these models achieved comparable inferencing accuracy, the 3D-CNN exhibited lower inference latency (33 ms) than 3D-ViT (86 ms), 3D-DenseNet121 (58 ms), and M3T (93 ms), representing a critical advantage for real-time surgical guidance applications. These results demonstrate the 3D-CNN's capability as a powerful and practical tool for computer-aided diagnosis in OCT-guided surgical interventions.

Indexed as

Deep LearningEndoscopyImaging, Three-DimensionalSurgery, Computer-AssistedTomography, Optical CoherenceAnimalsKidneySwine3D CNN3D‐CNNdata pre‐processingdeep learningnested cross‐validationOCT imaging

Identifiers

PMID40709742
PMCPMC12718128

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.