Evidence map›Paper›PMID 40709276›Full record

ArticleResearch square2025

Systematic evaluation of analytical methods for CSF proteomics.

Aastha Aastha, Leonardo Jose Monteiro Macedo Filho, Michael Woolman, Vladimir Ignatchenko, Alexander Keszei, Gabriela Remite-Berthet, Alireza Mansouri, Thomas Kislinger

Abstract readPreprint
In one paragraph

Article in Research square, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Aastha AasthaUniversity of Toronto.
Leonardo Jose Monteiro Macedo FilhoPenn State Milton S. Hershey Medical Center.
Michael WoolmanPrincess Margaret Cancer Centre, University Health Network.
Vladimir IgnatchenkoPrincess Margaret Cancer Centre, University Health Network.
Alexander KeszeiPrincess Margaret Cancer Centre, University Health Network.
Gabriela Remite-BerthetPenn State Milton S. Hershey Medical Center.
Alireza MansouriPenn State Milton S. Hershey Medical Center.
Thomas KislingerUniversity of Toronto.

Funding

Integration of CSF Proteogenomics in the Diagnosis and Management of Diffuse GliomasR01CA279357 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Alireza Mansouri · 2024 to 2026
$1.9M
NCI NIH HHS R01 CA279357
6 · The paper itself

Abstract

Cerebrospinal fluid (CSF) provides a unique window into brain pathology, yet challenges in unbiased mass-spectrometric (MS) discovery persist due to sample complexity and the need for optimized analytical workflows. Multiple laboratory workflows have been developed for CSF proteomics, each with distinct advantages for specific applications. To interrogate which laboratory workflow is most suitable for this biological matrix, we benchmarked five orthogonal sample-preparation strategies-MStern, Proteograph

Identifiers

PMID40709276
PMCPMC12288533

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.