Evidence map›Paper›PMID 40707481›Full record

ArticleNature communications2025

Unveiling the hidden interactome of CRBN molecular glues.

Kheewoong Baek, Rebecca J Metivier, Shourya S Roy Burman, Jonathan W Bushman, Hojong Yoon, Ryan J Lumpkin, Julia K Ryan, Dinah M Abeja, Megha Lakshminarayan, Hong Yue and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Broadening the molecular glue landscape.Nature chemical biology · 2026
    Article
  8. Review
  9. Article
  10. Proteomics-Driven Strategies for Proximity-Inducing Drug Discovery.Angewandte Chemie (International ed. in English) · 2026
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Kheewoong Baek *Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Rebecca J Metivier *Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Shourya S Roy BurmanDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.ORCID http://orcid.org/0000-0001-9274-9104
Jonathan W BushmanDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Hojong YoonDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Ryan J LumpkinDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Julia K RyanDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Dinah M AbejaDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Megha LakshminarayanDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Hong YueDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.ORCID http://orcid.org/0000-0003-4347-3193
Samuel OjedaDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Yuan XiongDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.ORCID http://orcid.org/0000-0002-2211-8267
Jianwei CheDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Alyssa L VeranoDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.ORCID http://orcid.org/0000-0003-2478-202X
Anna M SchmokerDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.ORCID http://orcid.org/0000-0003-2830-5650
Nathanael S GrayDepartment of Chemical and Systems Biology, ChEM-H and Stanford Cancer Institute, Stanford Medical School, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-5354-7403
Katherine A DonovanDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA. kdonovan@crystal.harvard.edu.ORCID http://orcid.org/0000-0002-8539-5106
Eric S FischerDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA. Eric_Fischer@dfci.harvard.edu.ORCID http://orcid.org/0000-0001-7337-6306

Funding

The molecular basis of IMiD induced neo-substrate recruitment to the CRL4CRBN ubiquitin E3 ligase.R01CA214608 · NCI · DANA-FARBER CANCER INST · PI Eric Sebastian Fischer · 2017 to 2026
$4.0M
Development of a generalizable chemo-proteomics screening platform for small molecule degraders applied to HDACsR01CA262188 · NCI · DANA-FARBER CANCER INST · PI FISCHER, ERIC SEBASTIAN · 2022 to 2025
$1.8M
Expanding pharmacological modalities for targeted cancer therapyK00CA253754 · NCI · BROAD INSTITUTE, INC. · PI YOON, HOJONG · 2021 to 2023
$292k
A Chemoproteomic Approach to Identify Molecular Glues for Targeted Cancer TherapyK99CA287069 · NCI · BROAD INSTITUTE, INC. · PI YOON, HOJONG · 2024 to 2024
$171k
Damon Runyon Cancer Research Foundation (Cancer Research Fund of the Damon Runyon-Walter Winchell Foundation) DRG-2514-24NCI NIH HHS K00 CA253754NCI NIH HHS K99 CA287069NCI NIH HHS R01 CA214608NCI NIH HHS R01 CA262188U.S. Department of Health & Human Services | National Institutes of Health (NIH) K99CA287069U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01CA214608U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01CA262188
6 · The paper itself

Abstract

Induced proximity by molecular glues refers to strategies that leverage the recruitment of proteins to facilitate their modification, regulation or degradation. As prospective design of molecular glues remains challenging, unbiased discovery methods are necessary to discover new chemical targets. Here we establish a high throughput affinity proteomics workflow leveraging E3 ligase activity-impaired CRBN-DDB1ΔB in cell lysates for the unbiased identification of molecular glue targets. By mapping the interaction landscape of CRBN-binding molecular glues, we unveil 298 protein targets and demonstrate the utility of enrichment methods for identifying targets overlooked by established methods. We use a computational workflow to estimate target confidence and perform biochemical and structural validation of uncharacterized neo-substrates. We further identify a lead compound for the previously untargeted non-zinc finger PPIL4 through a biochemical screen. Our study provides a comprehensive inventory of targets chemically recruited to CRBN and delivers a robust and scalable workflow for identifying drug-induced protein interactions in cell lysates.

Indexed as

Adaptor Proteins, Signal TransducingUbiquitin-Protein LigasesHEK293 CellsHumansProtein BindingProteomicsAdaptor Proteins, Signal TransducingCRBN protein, humanUbiquitin-Protein Ligases

Identifiers

PMID40707481
PMCPMC12289921

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.