Evidence map›Paper›PMID 40707449›Full record

ArticleNature communications2025

Comparative genomics of the parasite Trichomonas vaginalis reveals genes involved in spillover from birds to humans.

Steven A Sullivan, Jordan C Orosco, Francisco Callejas-Hernández, Frances Blow, Hayan Lee, T Rhyker Ranallo-Benavidez, Andrew Peters, Shane R Raidal, Yvette A Girard, Christine K Johnson and 17 more

Abstract readComparative Study
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Evolution and ecology of commensal gut protists: recent advances.Current opinion in genetics & development · 2025
    Review
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors.

Steven A Sullivan *Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA.
Jordan C Orosco *Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA.
Francisco Callejas-HernándezCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA.
Frances BlowCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA.ORCID http://orcid.org/0000-0003-3064-5160
Hayan LeeSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID http://orcid.org/0000-0003-0571-3192
T Rhyker Ranallo-BenavidezDepartment of Computer Science, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD, USA.ORCID http://orcid.org/0000-0003-3137-8439
Andrew PetersSchool of Agricultural, Environmental and Veterinary Sciences, Charles Sturt University, Wagga Wagga, NSW, Australia.
Shane R RaidalMelbourne Veterinary School, The University of Melbourne, Melbourne, VIC, Australia.
Yvette A GirardOne Health Institute, School of Veterinary Medicine, University of California, Davis, Davis, CA, USA.
Christine K JohnsonOne Health Institute, School of Veterinary Medicine, University of California, Davis, Davis, CA, USA.ORCID http://orcid.org/0000-0001-6673-8743
Krysta H RogersWildlife Health Laboratory, California Department of Fish & Wildlife, Sacramento, CA, USA.
Richard GerholdDepartment of Biomedical and Diagnostic Sciences, College of Veterinary Medicine, University of Tennessee, Knoxville, TN, USA.
Hayley MangelsonPhase Genomics, Seattle, WA, USA.
Ivan LiachkoPhase Genomics, Seattle, WA, USA.
Harsh SrivastavaCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA.
Chris ChandlerCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA.
Daniel BerenbergCourant Institute, Department of Computer Science, New York University, New York, NY, USA.
Richard A BonneauCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA.ORCID http://orcid.org/0000-0003-4354-7906
Po-Jung HuangMolecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan.
Yuan-Ming YehMolecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan.ORCID http://orcid.org/0000-0001-8720-947X
Chi-Ching LeeMolecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan.
Hsuan LiuMolecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan.
Ting-Wen ChenMolecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan.ORCID http://orcid.org/0000-0003-4028-2375
Petrus TangMolecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan.
Cheng-Hsun ChiuMolecular Infectious Disease Research Center, Chang Gung Memorial Hospital, Linkou, Taoyuan, Taiwan.
Michael C SchatzDepartment of Computer Science, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD, USA.
Jane M CarltonCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA. JaneCarlton@jhu.edu.ORCID http://orcid.org/0000-0001-9340-5020

Funding

An in integrated platform for multiomic analyses of pathogen and host data using scalable public infrastructureU24AI183870 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI Kelsey M Beavers, Maximilian Haeussler · 2024 to 2026
$10.2M
Delivering FAIR Datasets for the Neglected Parasite Trichomonas vaginalis and Studies in Comparative GenomicsR21AI149449 · NIAID · NEW YORK UNIVERSITY · PI CARLTON, JANE M · 2020 to 2021
$520k
Chang Gung Memorial Hospital, Linkou (Linkou Chang Gung Memorial Hospital) CMRPD1M0571-2NIAID NIH HHS R21 AI149449NIAID NIH HHS U24 AI183870U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R21AI149449U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) U24AI183870
6 · The paper itself

Abstract

Trichomonas vaginalis, the causative agent of the venereal disease trichomoniasis, infects men and women globally and is associated with serious outcomes during pregnancy, increased risk of HIV-1 infection, and cancers of the human reproductive tract. Species of trichomonad parasitize a range of hosts in addition to humans, including birds, livestock, and pets. Genetic analysis of trichomonads recovered from columbid birds has provided evidence that they undergo frequent host-switching, and that a spillover event from columbids likely gave rise to T. vaginalis in humans. Here we describe a comparative genomics study of seven trichomonad species, generating chromosome-scale reference genomes for T. vaginalis and its avian sister species Trichomonas stableri, and assemblies of five other species that infect birds and mammals. Human-infecting trichomonad lineages have undergone recent and convergent genome size expansions compared to their avian sister species, a result of extensive repeat expansions specifically of multicopy gene families and transposable elements, with genetic drift likely a driver due to relaxed selection. Trichomonads are thought to have independently host-switched twice from birds to mammals/humans. We identify gene functions implicated in the transition, including host tissue adherence and phagocytosis, extracellular vesicle formation, and CAZyme virulence factors, which are all associated with pathogenesis phenotypes.

Indexed as

BirdsGenome, ProtozoanTrichomonas InfectionsTrichomonas vaginalisAnimalsFemaleGenomicsHumansPhylogeny

Identifiers

PMID40707449
PMCPMC12289875

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.