Evidence map›Paper›PMID 40705968›Full record

ArticleMolecular oncology2025

Single-cell transcriptomics redefines focal neuroendocrine differentiation as a distinct prostate cancer pathology.

Rosalia Quezada Urban, Shivakumar Keerthikumar, Ashlee Clark, Hong Wang, Belinda Phipson, Andrew Bakshi, Andrew Ryan, Heather Thorne, Renea A Taylor, Mitchell G Lawrence and 3 more

Abstract read
In one paragraph

Article in Molecular oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Rosalia Quezada UrbanCancer Research Division, Peter MacCallum Cancer Centre, Melbourne, Australia.
Shivakumar KeerthikumarCancer Research Division, Peter MacCallum Cancer Centre, Melbourne, Australia.
Ashlee ClarkDepartment of Anatomy and Developmental Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Australia.
Hong WangDepartment of Anatomy and Developmental Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Australia.
Belinda PhipsonBioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.
Andrew BakshiCancer Research Division, Peter MacCallum Cancer Centre, Melbourne, Australia.
Andrew RyanTissuPath Pathology Ltd, Mount Waverley, Australia.
Heather ThorneCancer Research Division, Peter MacCallum Cancer Centre, Melbourne, Australia.
Renea A TaylorCancer Research Division, Peter MacCallum Cancer Centre, Melbourne, Australia.
Mitchell G LawrenceCancer Research Division, Peter MacCallum Cancer Centre, Melbourne, Australia.
Gail P RisbridgerCancer Research Division, Peter MacCallum Cancer Centre, Melbourne, Australia.
Roxanne ToivanenCancer Research Division, Peter MacCallum Cancer Centre, Melbourne, Australia.
David L GoodeCancer Research Division, Peter MacCallum Cancer Centre, Melbourne, Australia.ORCID 0000-0002-3277-6562

Funding

Cancer Council VictoriaCass Foundation 8669EJ Whitten FoundationMelbourne Research ScholarshipMovember Foundation Global Action Plan 1National Health and Medical Research Council 1138242National Health and Medical Research Council 1185616Peter and Lyndy White FoundationPeter MacCallum FoundationRotary Club of ManninghamSistema Nacional de InvestigadoresTissuPathVictorian Cancer Agency MCRF15023Victorian Cancer Agency MCRF17005Victorian Cancer Agency MCRF18017
6 · The paper itself

Abstract

Neuroendocrine prostate cancer (NEPC) tumours are classified by pathology into several distinct subtypes. Gene expression profiling has revealed transcriptional heterogeneity across NEPC, but this is rarely considered in the context of variation between pathologies. Diagnosis typically relies on immunohistochemical markers (CHGA, SYP, NCAM1) and genomic alterations in RB1, PTEN and TP53. We hypothesized that NEPC pathologies have unique transcriptional features. Single-cell RNA sequencing of 18 632 tumour cells from nine patient-derived xenograft models representing five pathologies (small-cell and large-cell neuroendocrine carcinomas, focal neuroendocrine differentiation (Focal NED), low-grade neuroendocrine and amphicrine) demonstrated pathway-specific enrichment. Focal NED and amphicrine tumours exhibited cellular subpopulations enriched for KRAS, IL2-STAT5 and TNF signalling pathways, absent in small- and large-cell carcinomas, which were instead enriched for Myc and E2F pathways. Furthermore, focal NED cells exhibited minimal clonal divergence from adjacent adenocarcinoma cells, while small cell carcinoma cells were clonally distinct. These data underscore significant transcriptional variation among NEPC pathologies, highlighting focal NED's unique biological context and its clinical implications.

Indexed as

Carcinoma, NeuroendocrineCell DifferentiationProstatic NeoplasmsSingle-Cell AnalysisTranscriptomeAnimalsGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMiceneuroendocrine prostate cancerpatient‐derived xenograftsingle‐cell RNA sequencingtumour heterogeneity

Identifiers

PMID40705968
PMCPMC12515717

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.