Evidence map›Paper›PMID 40705423›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Cell type-specific purifying selection of synonymous mitochondrial DNA variation.

Caleb A Lareau, Patrick Maschmeyer, Yajie Yin, Jacob C Gutierrez, Ryan S Dhindsa, Anne-Sophie Gribling-Burrer, Sebastian Zielinski, Yu-Hsin Hsieh, Lena Nitsch, Veronika Dimitrova and 20 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Cell type-specific purifying selection of synonymous mitochondrial DNA variation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Caleb A Lareau *Computational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.ORCID 0000-0003-4179-4807
Patrick Maschmeyer *Berlin Institute of Health at Charité-Universitätsmedizin Berlin, Berlin 10117, Germany.
Yajie YinDepartment of Pathology, Stanford University, Stanford, CA 94305.ORCID 0000-0002-2220-005X
Jacob C GutierrezComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Ryan S DhindsaDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0002-8965-0813
Anne-Sophie Gribling-BurrerHelmholtz Institute for RNA-based Infection Research, Helmholtz-Center for Infection Research, Würzburg 97080, Germany.
Sebastian ZielinskiHelmholtz Institute for RNA-based Infection Research, Helmholtz-Center for Infection Research, Würzburg 97080, Germany.ORCID 0000-0001-5070-1209
Yu-Hsin HsiehBerlin Institute of Health at Charité-Universitätsmedizin Berlin, Berlin 10117, Germany.
Lena NitschBerlin Institute of Health at Charité-Universitätsmedizin Berlin, Berlin 10117, Germany.ORCID 0000-0003-0775-1969
Veronika DimitrovaBerlin Institute of Health at Charité-Universitätsmedizin Berlin, Berlin 10117, Germany.ORCID 0009-0007-6915-7136
Benan NalbantComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Frank A BuquicchioDepartment of Pathology, Stanford University, Stanford, CA 94305.ORCID 0000-0002-9910-4947
Tsion AbayDepartment of Pathology, Stanford University, Stanford, CA 94305.ORCID 0009-0009-0024-2732
Robert R StickelsDepartment of Pathology, Stanford University, Stanford, CA 94305.
Jacob C UlirschIllumina AI Laboratory, San Diego, CA 92122.
Patrick YanDepartment of Pathology, Stanford University, Stanford, CA 94305.
Fangyi WangDepartment of Pathology, Stanford University, Stanford, CA 94305.ORCID 0009-0000-8310-3088
Zhuang MiaoDepartment of Pathology, Stanford University, Stanford, CA 94305.
Katalin SandorDepartment of Pathology, Stanford University, Stanford, CA 94305.ORCID 0000-0003-2892-4865
Bence DanielDepartment of Pathology, Stanford University, Stanford, CA 94305.
Vincent LiuDepartment of Pathology, Stanford University, Stanford, CA 94305.
Paul L MendezDepartment of Biology, Chemistry, Pharmacy, Freie Universität Berlin, Berlin 14195, Germany.ORCID 0000-0003-2025-7981
Petra KnausDepartment of Biology, Chemistry, Pharmacy, Freie Universität Berlin, Berlin 14195, Germany.
Manpreet MeyerBerlin Institute of Health at Charité-Universitätsmedizin Berlin, Berlin 10117, Germany.ORCID 0009-0004-5700-8529
William J GreenleafDepartment of Genetics, Stanford University, Stanford, CA 94305.ORCID 0000-0003-1409-3095
Anshul KundajeDepartment of Genetics, Stanford University, Stanford, CA 94305.ORCID 0000-0003-3084-2287
Redmond P SmythHelmholtz Institute for RNA-based Infection Research, Helmholtz-Center for Infection Research, Würzburg 97080, Germany.ORCID 0000-0002-1580-0671
Mathias MunschauerHelmholtz Institute for RNA-based Infection Research, Helmholtz-Center for Infection Research, Würzburg 97080, Germany.
Leif S LudwigBerlin Institute of Health at Charité-Universitätsmedizin Berlin, Berlin 10117, Germany.ORCID 0000-0002-2916-2164
Ansuman T SatpathyDepartment of Pathology, Stanford University, Stanford, CA 94305.ORCID 0000-0002-5167-537X

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Single-cell Mapping Center for Human Regulatory Elements and Gene ActivityUM1HG012076 · NHGRI · STANFORD UNIVERSITY · PI Michael Ryan Corces, Ansuman Satpathy · 2021 to 2026
$13.8M
The Human DNA virome: from petabase scale to single-cell resolutionU01AT012984 · NCCIH · SLOAN-KETTERING INST CAN RESEARCH · PI Caleb Andrew Lareau · 2024 to 2026
$5.2M
Charting somatic evolution via single-cell multiomicsR00HG012579 · NHGRI · SLOAN-KETTERING INST CAN RESEARCH · PI LAREAU, CALEB ANDREW · 2023 to 2025
$747k
HHS | NIH | National Cancer Institute (NCI) P30CA008748NCCIH NIH HHS U01 AT012984NCI NIH HHS P30 CA008748NHGRI NIH HHS R00 HG012579NHGRI NIH HHS UM1 HG012076NIAID NIH HHS T32 AI007290
6 · The paper itself

Abstract

While somatic variants are well-characterized drivers of tumor evolution, their influence on cellular fitness in nonmalignant contexts remains understudied. We identified a mosaic synonymous variant (m.7076A > G) in the mitochondrial DNA (mtDNA)-encoded cytochrome c-oxidase subunit 1 (MT-CO1, p.Gly391=), present at homoplasmy in 47% of immune cells from a healthy donor. Single-cell multiomics revealed strong, lineage-specific selection against the m.7076G allele in CD8

Indexed as

DNA, MitochondrialElectron Transport Complex IVGenetic VariationSelection, GeneticAllelesCD8-Positive T-LymphocytesHumansMitochondriaRNA, TransferDNA, MitochondrialElectron Transport Complex IVRNA, Transferimmunologymitochondriaselectionsingle-cell

Identifiers

PMID40705423
PMCPMC12318227

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.