Evidence map›Paper›PMID 40704964›Full record

ReviewThe Journal of cell biology2025

The rapidly expanding role of LC3-interacting regions in autophagy.

Brian J North, Dorotea Fracchiolla, Michael J Ragusa, Sascha Martens, Christopher J Shoemaker

Abstract readReview
In one paragraph

Review in The Journal of cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Emerging mechanisms of ATG8-independent non-canonical autophagy.Journal of physiology and biochemistry · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Autophagy · 2026
    Review
  6. METTL14-dependent mbioRxiv : the preprint server for biology · 2026
    Article
  7. Links Between Autophagy and Healthy Aging.Journal of molecular biology · 2026
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. NADCells · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Brian J NorthDepartment of Biochemistry and Cell Biology, Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.ORCID 0009-0004-7378-2960
Dorotea FracchiollaDepartment of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.ORCID 0000-0002-1612-5225
Michael J RagusaDepartment of Chemistry, Dartmouth College, Hanover, NH, USA.ORCID 0000-0002-0231-0876
Sascha MartensMax Perutz Labs, Vienna Biocenter Campus, Vienna, Austria.ORCID 0000-0003-3786-8199
Christopher J ShoemakerDepartment of Biochemistry and Cell Biology, Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.ORCID 0000-0003-2004-6340

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MIERKE, DALE F · 2016 to 2025
$25.9M
Dissecting the Molecular Mechanisms of Selective AutophagyR35GM128663 · NIGMS · DARTMOUTH COLLEGE · PI Michael Joseph Ragusa · 2018 to 2026
$3.5M
Molecular mechanisms governing selective autophagy in mammalian cellsR35GM142644 · NIGMS · DARTMOUTH COLLEGE · PI Christopher J Shoemaker · 2021 to 2026
$2.5M
Dartmouth Cancer CenterNCI NIH HHS P30 CA023108NCI NIH HHS P30CA023108NIGMS NIH HHS P20 GM113132NIGMS NIH HHS P20GM113132NIGMS NIH HHS R35 GM128663NIGMS NIH HHS R35GM128663NIGMS NIH HHS R35 GM142644NIGMS NIH HHS R35GM142644
6 · The paper itself

Abstract

LC3-interacting regions (LIRs), or Atg8-interacting motifs (AIMs), are short linear motifs found in unstructured loops or intrinsically disordered regions of many autophagy-related proteins. LIRs were initially identified for their role in binding to Atg8 family proteins on autophagosomal membranes. However, emerging evidence suggests that LIRs and their surrounding residues mediate interactions with a wide array of proteins beyond Atg8s. This broadens the biological significance of LIRs in autophagy, rendering them an organizing principle of the autophagy machinery. In this perspective, we explore recent advances highlighting the multifunctional roles of LIRs, including their capacity to mediate binding with diverse factors. We discuss insights into the mechanisms underlying LIR-mediated interactions and propose an updated model to explain Atg8 diversification in higher eukaryotes. We conclude by addressing key challenges and outlining future directions for understanding LIR biology and its broader implications for cellular homeostasis.

Indexed as

AutophagyAutophagy-Related Protein 8 FamilyMicrotubule-Associated ProteinsAnimalsAutophagosomesHumansProtein BindingAutophagy-Related Protein 8 FamilyMAP1LC3A protein, humanMicrotubule-Associated Proteins

Identifiers

PMID40704964
PMCPMC12313203

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.