Evidence map›Paper›PMID 40701174›Full record

ArticleJournal of the American Chemical Society2025

Design of Antigen-Targeting Fluorogenic Probes Utilizing Intramolecular Addition Reaction of Protein-Dye Hybrids.

Mamiko Nakadate, Ryosuke Kojima, Naoki Seike, Ryo Tachibana, Kyohhei Fujita, Reiko Tsuchiya, Mako Kamiya, Andreas Plückthun, Yasuteru Urano

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mamiko NakadateGraduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0009-0008-2786-9407
Ryosuke KojimaGraduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0002-3792-9222
Naoki SeikeGraduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0009-0008-8197-219X
Ryo TachibanaGraduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0002-7229-3370
Kyohhei FujitaGraduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0002-6542-6788
Reiko TsuchiyaGraduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan.
Mako KamiyaLaboratory for Chemistry and Life Science, Institute of Integrated Research, Institute of Science Tokyo, Kanagawa 226-8501, Japan.ORCID 0000-0002-5592-1849
Andreas PlückthunDepartment of Biochemistry, University of Zurich, Zurich 8057, Switzerland.ORCID 0000-0003-4191-5306
Yasuteru UranoGraduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0002-1220-6327

Funding

BEHAVIORAL PHARMACOLOGY OF OPIOIDS &CAFFEINEK05DA000008 · NIDA · EMORY UNIVERSITY · PI HOLTZMAN, STEPHEN G · 1985 to 2004
$596k
NIDA NIH HHS K05 DA000008
6 · The paper itself

Abstract

Fluorogenic probes for antigens are useful for various purposes, including medical diagnostics and imaging, but achieving a rapid, large fluorescence increase is difficult. Here, we report a new class of fluorogenic probes for antigens based on a conjugate of an antibody-mimetic DARPin bearing a site-specifically incorporated cysteine and silicon-pyronine (SiP), which reacts reversibly with thiols. By using a library-screening approach, we found that the fluorescence of SiP conjugated to a DARPin is quenched via π-deconjugating addition reaction of the cysteine installed in the DARPin to SiP. Upon antigen binding, the equilibrium of this reaction is shifted to dissociation, restoring π-conjugation in the SiP and resulting in a large increase in fluorescence. As proof of concept of this chemical design principle, we constructed fluorogenic probes targeting GFP and EpCAM, which showed 25- and 12-fold fluorescence increases upon binding, respectively. The latter probe enabled wash-free cancer cell imaging with a low background.

Indexed as

Fluorescent DyesCysteineEpithelial Cell Adhesion MoleculeGreen Fluorescent ProteinsHumansMolecular StructureOptical ImagingSiliconCysteineEpithelial Cell Adhesion MoleculeFluorescent DyesGreen Fluorescent ProteinsSilicon

Identifiers

PMID40701174
PMCPMC12396215

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.