Evidence map›Paper›PMID 40700686›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2025

Explaining alerts from a pediatric risk prediction model using clinical text.

Samuel Nycklemoe, Sriharsha Devarapu, Yanjun Gao, Kyle Carey, Nicholas Kuehnel, Neil Munjal, Priti Jani, Matthew Churpek, Dmitriy Dligach, Majid Afshar and 1 more

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Clinical decision-making and artificial intelligence.Journal of the American Medical Informatics Association : JAMIA · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Samuel NycklemoeDepartment of Biostatistics & Medical Informatics, University of Wisconsin-Madison, Madison, WI 53726, United States.
Sriharsha DevarapuDepartment of Biostatistics & Medical Informatics, University of Wisconsin-Madison, Madison, WI 53726, United States.
Yanjun GaoDepartment of Biomedical Informatics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States.ORCID 0000-0002-9341-7360
Kyle CareyDepartment of Medicine, University of Chicago, Chicago, IL 60637, United States.
Nicholas KuehnelDepartment of Emergency Medicine, University of Wisconsin-Madison, Madison, WI 53726, United States.
Neil MunjalDepartment of Pediatrics, University of Wisconsin-Madison, Madison, WI 53726, United States.
Priti JaniDepartment of Pediatrics, University of Chicago, Chicago, IL 60637, United States.
Matthew ChurpekDepartment of Biostatistics & Medical Informatics, University of Wisconsin-Madison, Madison, WI 53726, United States.
Dmitriy DligachDepartment of Computer Science, Loyola University, Chicago, IL 60626, United States.ORCID 0000-0002-2585-2707
Majid AfsharDepartment of Biostatistics & Medical Informatics, University of Wisconsin-Madison, Madison, WI 53726, United States.
Anoop MayampurathDepartment of Biostatistics & Medical Informatics, University of Wisconsin-Madison, Madison, WI 53726, United States.

Funding

Learning Universal Patient Representations with Hierarchical TransformersR01LM012973 · NLM · BOSTON CHILDREN'S HOSPITAL · PI Timothy A Miller · 2019 to 2026
$3.5M
Using causal machine learning for personalized treatment recommendations in critically ill patientsR01HL157262 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Matthew Michael Churpek · 2021 to 2026
$3.1M
Clinical Decision Support for Early Detection of Deterioration in Hospitalized ChildrenR01HL173037 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Anoop Mayampurath · 2024 to 2026
$1.5M
NHLBI NIH HHS R01 HL157262NHLBI NIH HHS R01 HL 173037NHLBI NIH HHS R01 HL173037NLM NIH HHS IH R01 LM012973NLM NIH HHS R01 LM012973
6 · The paper itself

Abstract

objectiveRisk prediction models are used in hospitals to identify pediatric patients at risk of clinical deterioration, enabling timely interventions and rescue. The objective of this study was to develop a new explainer algorithm that uses a patient's clinical notes to generate text-based explanations for risk prediction alerts. MATERIALS AND

methodsWe conducted a retrospective study of 39 406 patient admissions to the American Family Children's Hospital at the University of Wisconsin-Madison (2009-2020). The pediatric Calculated Assessment of Risk and Triage (pCART) validated risk prediction model was used to identify children at risk for deterioration. A transformer model was trained to use clinical notes from the 12-hour period preceding each pCART score to predict whether a patient was flagged as at risk. Then, label-aware attention highlighted text phrases most important to an at-risk alert. The study cohort was randomly split into derivation (60%) and validation (20%) data, and a separate test (20%) was used to evaluate the explainer's performance.

resultsOur pCART Explainer algorithm performed well in discriminating at-risk pCART alert vs no alert (c-statistic 0.805). Sample explanations from pCART Explainer revealed clinically important phrases such as "rapid breathing," "fall risk," "distension," and "grunting," thereby demonstrating excellent face validity. DISCUSSION: The pCART Explainer could quickly orient clinicians to the patient's condition by drawing attention to key phrases in notes, potentially enhancing situational awareness and guiding decision-making.

conclusionWe developed pCART Explainer, a novel algorithm that highlights text within clinical notes to provide medically relevant context about deterioration alerts, thereby improving the explainability of the pCART model.

Indexed as

AlgorithmsClinical DeteriorationElectronic Health RecordsChildChild, PreschoolDecision Support Systems, ClinicalFemaleHospitals, PediatricHumansInfantMaleRetrospective StudiesRisk AssessmentTriageWisconsinclinical noteselectronic health recordsexplainabilitypediatricsrisk predictions

Identifiers

PMID40700686
PMCPMC12361859

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.