Evidence map›Paper›PMID 40700679›Full record

ArticleJCO clinical cancer informatics2025

Automatic Abstraction of Computed Tomography Imaging Indication Using Natural Language Processing for Evaluation of Surveillance Patterns in Long-Term Lung Cancer Survivors.

Aparajita Khan, Eunji Choi, Chloe Su, Anna Graber-Naidich, Solomon Henry, Mina L Satoyoshi, Archana Bhat, Allison W Kurian, Su-Ying Liang, Joel Neal and 7 more

Abstract read
In one paragraph

Article in JCO clinical cancer informatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Aparajita KhanDepartment of Computer Science and Engineering, Indian Institute of Technology (BHU) Varanasi, Varanasi, India.ORCID 0000-0003-0415-9070
Eunji ChoiQuantitative Sciences Unit, Department of Medicine, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0003-1315-1433
Chloe SuQuantitative Sciences Unit, Department of Medicine, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0002-2204-3314
Anna Graber-NaidichQuantitative Sciences Unit, Department of Medicine, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0002-6281-3977
Solomon HenryDepartment of Biomedical Data Science, Stanford University, Stanford, CA.ORCID 0000-0003-1591-1897
Mina L SatoyoshiResearch Informatics Center, Stanford University, Stanford, CA.ORCID 0000-0003-3068-4020
Archana BhatResearch Informatics Center, Stanford University, Stanford, CA.ORCID 0009-0009-5726-6663
Allison W KurianDepartment of Epidemiology and Population Health, Stanford University, Stanford, CA.ORCID 0000-0002-6175-9470
Su-Ying LiangPalo Alto Medical Foundation Research Institute, Sutter Health, Palo Alto, CA.ORCID 0000-0002-6616-5970
Joel NealDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0003-3119-9334
Michael GouldDepartment of Health Systems Science, Kaiser Permanente Bernard J. Tyson School of Medicine, Pasadena, CA.
Ann LeungDepartment of Radiology, Stanford University School of Medicine, Stanford, CA.
Heather A WakeleeDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0003-1136-980X
Leah M BackhusDivision of Thoracic Surgery, Department of Cardiothoracic Surgery, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0002-4553-1003
Curtis LanglotzDepartment of Radiology, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0002-8972-8051
Julie WuPalo Alto VA, Palo Alto, CA.ORCID 0000-0003-2388-1827
Summer S HanQuantitative Sciences Unit, Department of Medicine, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0002-2013-6883

Funding

Evaluation of genetic, clinical, and environmental risk factors to establish effective screening strategies for second primary lung cancerR37CA226081 · NCI · STANFORD UNIVERSITY · PI HAN, SUMMER S · 2018 to 2024
$4.3M
Integrating Multiple Electronic Health Records Systems to Improve Lung Cancer OutcomesR01CA282793 · NCI · STANFORD UNIVERSITY · PI Summer S Han · 2023 to 2026
$2.6M
NCI NIH HHS R01 CA282793NCI NIH HHS R37 CA226081
6 · The paper itself

Abstract

purposeDespite its routine use to monitor patients with lung cancer (LC), real-world evaluations of the impact of computed tomography (CT) surveillance on overall survival (OS) have been inconsistent. A major confounder is the absence of imaging indications because patients undergo CT scans for purposes beyond surveillance, like symptom evaluations (eg, cough) linked to poor survival. We propose a novel natural language processing model to predict CT imaging indications (surveillance

methodsWe used electronic health records of 585 long-term LC survivors (≥5 years) at Stanford, followed for up to 22 years. Their 3,362 post-5-year CT reports (including 1,672 manually annotated) were used for modeling by integrating structured variables (eg, CT intervals) with key-phrase analysis of radiology reports. Naïve analysis compared OS in patients with CT for any indications (including symptoms) versus those without post-5-year CT, as in previous studies. Using model-predicted indications, we conducted exploratory analyses to compare OS between those with post-5-year surveillance CT and those without.

resultsThe model showed high discrimination (AUC, 0.86), with key predictors including a longer interval (≥6-month) from the previous CT (odds ratios [OR], 5.50;

conclusionOur model abstracted CT indications from real-world data with high discrimination. Exploratory analyses revealed the obscured imaging-OS association when considering indications, highlighting the model's potential for future real-world studies.

Indexed as

Cancer SurvivorsLung NeoplasmsNatural Language ProcessingTomography, X-Ray ComputedAgedElectronic Health RecordsFemaleHumansMaleMiddle Aged

Identifiers

PMID40700679
PMCPMC12309515

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.