Evidence map›Paper›PMID 40699740›Full record

ArticleCurrent issues in molecular biology2025

Multidimensional Transcriptomics Reveals the Key Genes and Pathways Regulating the Acidity of Apples.

Wenyuan Yang, Hang Yu, Lian Tao, Hongjiang Xie

Abstract read
In one paragraph

Article in Current issues in molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Wenyuan YangHorticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China.
Hang YuHorticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China.ORCID 0000-0002-1798-2288
Lian TaoHorticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China.
Hongjiang XieHorticulture Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China.

Funding

Innovation Team of Sichuan Province SCCXTD-2024-4National Key R&D Program of China 2021YFD1600800Natural Science Foundation of Sichuan Province 2023NSFSC0157Natural Science Foundation of Sichuan Province 2025ZNSFSC0187
6 · The paper itself

Abstract

Low-acid apples are popular among consumers, but the mechanisms behind the complex differences in acidity among varieties that are caused by high altitude are not clear. In this study, we used the 'Golden Delicious' apple and its superior variant in the Western Sichuan Plateau of China to analyze organic acid composition, content, and the expression levels of related regulated genes during fruit development. We found that the organic acid content in the variant was significantly lower than that in the 'Golden Delicious' apple. In both apples, quinic and malic acids were the predominant organic acids, while citric and tartaric acids were present in lower amounts. In this multidimensional regulatory study, we used transcriptome sequencing, cluster analysis, and weighted gene co-expression network analysis (WGCNA) to reveal that differentially expressed genes are enriched in multiple pathways affecting fruit acidity during apple development; malate dehydrogenase (MDH) affects the malic acid content of fruits of different varieties; and H

Indexed as

acidityapplefruit ripeningmutant varietyWestern Sichuan plateau

Identifiers

PMID40699740
PMCPMC12110645

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.