Evidence map›Paper›PMID 40697249›Full record

ArticleQuantitative biology (Beijing, China)2025

Computational Systems Biology Approaches to Cellular Aging - Integrating Network Maps and Dynamical Models.

Hetian Su, Nan Hao

Abstract read
In one paragraph

Article in Quantitative biology (Beijing, China), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Hetian SuDepartment of Molecular Biology, School of Biological Sciences, University of California San Diego, La Jolla, California, USA.
Nan HaoDepartment of Molecular Biology, School of Biological Sciences, University of California San Diego, La Jolla, California, USA.

Funding

Network-Driven Dynamics of Replicative AgingR01AG056440 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEFF M HASTY, Nan Hao · 2017 to 2026
$5.6M
Reprogramming cell-fate decisions through predictive modeling and synthetic biologyR01GM144595 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAO, NAN, HASTY, JEFF M · 2022 to 2025
$2.8M
Systems biology analysis of RNA-binding protein aggregation during cellular agingR01AG068112 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAO, NAN · 2021 to 2025
$2.3M
Engineered genetic clocks for control of cellular agingR01AG086348 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEFF M HASTY, Nan Hao · 2024 to 2026
$2.0M
NIA NIH HHS R01 AG056440NIA NIH HHS R01 AG068112NIA NIH HHS R01 AG086348NIGMS NIH HHS R01 GM144595
6 · The paper itself

Abstract

Cellular aging is a multifaceted, complex process. Many genes and factors have been identified that regulate cellular aging. However, how these genes and factors interact with one another and how these interactions drive the aging processes in single cells remain largely unclear. Recently, computational systems biology has demonstrated its potential to empower aging research by providing quantitative descriptions and explanations of complex aging phenotypes, mechanistic insights into the emergent dynamic properties of regulatory networks, and testable predictions that can guide the design of new experiments and interventional strategies. In general, current complex systems approaches can be categorized into two types: (1) network maps that depict the topologies of large-scale molecular networks without detailed characterization of the dynamics of individual components and (2) dynamical models that describe the temporal behavior in a particular set of interacting factors. In this review, we discuss examples that showcase the application of these approaches to cellular aging, with a specific focus on the progress in quantifying and modeling the replicative aging of budding yeast

Indexed as

cellular aginggene regulatory networkmathematical modelnonlinear dynamicsSystems biology

Identifiers

PMID40697249
PMCPMC12277577

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.