Evidence map›Paper›PMID 40694337›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Sharks and rays have the oldest vertebrate sex chromosome with unique sex determination mechanisms.

Taiki Niwa, Yoshinobu Uno, Yuta Ohishi, Mitsutaka Kadota, Naotaka Aburatani, Itsuki Kiyatake, Daiki Katooka, Michikazu Yorozu, Nobutaka Tsuzuki, Atsushi Toyoda and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Silver chimaera genome highlights lineage-specific sex chromosome and opsin gene evolution in holocephalans.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Taiki NiwaDepartment of Genetics, School of Life Science, SOKENDAI (The Graduate University for Advanced Studies), Mishima 411-8540, Japan.
Yoshinobu UnoLaboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research, Kobe 650-0047, Japan.
Yuta OhishiLaboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research, Kobe 650-0047, Japan.
Mitsutaka KadotaLaboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research, Kobe 650-0047, Japan.ORCID 0000-0002-1674-6697
Naotaka AburataniLaboratory of Physiology, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa 277-8564, Japan.
Itsuki KiyatakeOsaka Aquarium Kaiyukan, Osaka 552-0022, Japan.
Daiki KatookaEnoshima Aquarium, Fujisawa 251-0035, Japan.
Michikazu YorozuMaxell Aqua Park Shinagawa, Tokyo 108-8611, Japan.
Nobutaka TsuzukiShimoda Aquarium, Shimoda 415-8502, Japan.
Atsushi ToyodaComparative Genomics Laboratory, Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima 411-8540, Japan.ORCID 0000-0002-0728-7548
Wataru TakagiLaboratory of Physiology, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa 277-8564, Japan.ORCID 0000-0002-7882-0223
Masaru NakamuraOkinawa Churashima Foundation Research Institute, Motobu 905-0206, Japan.
Shigehiro KurakuDepartment of Genetics, School of Life Science, SOKENDAI (The Graduate University for Advanced Studies), Mishima 411-8540, Japan.ORCID 0000-0003-1464-8388

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 16H06279MEXT | Japan Society for the Promotion of Science (JSPS) 20H03269MEXT | Japan Society for the Promotion of Science (JSPS) 21K06286MEXT | Japan Society for the Promotion of Science (JSPS) 23KJ1002
6 · The paper itself

Abstract

Sex determination has been investigated across vertebrate lineages to reveal the stepwise evolution of sex chromosomes and the diversity of responsible molecular mechanisms. However, these studies rarely include cartilaginous fishes, which diverged from the other vertebrates 450 Mya, hindering the comprehensive view of vertebrate sex determination. Here, we produced chromosome-scale genome assemblies of egg-laying shark species and comparatively investigated genome sequences and transcriptome profiles across diverse cartilaginous fishes. Sex chromosome identification, supported by cytogenetic experiments, elucidated the homology of X chromosomes between sharks and rays as well as an extensively degenerated Y chromosome harboring no detectable male-specific genes. Orthologs of documented sex-determining genes were identified, but not on these sex chromosomes. Transcriptomic analyses combined with histology of embryonic gonads revealed female-biased expression of X-linked genes-including those implicated in the TGF-β and IGF signaling pathways-attributed to incomplete dosage compensation. Our findings indicate that sharks and rays share the oldest sex chromosomes among vertebrates that originated around 300 Mya and the dosage-dependent sex determination mechanism composed of distinct molecules from other vertebrates. This study highlights the antiquity of sex chromosomes and the uniqueness of sex determination mechanisms in sharks and rays, which advances our understanding of evolutionary plasticity in vertebrate sex determination.

Indexed as

Sex ChromosomesSex Determination ProcessesSharksSkates, FishAnimalsEvolution, MolecularFemaleGenomeMaleTranscriptomecartilaginous fishessex chromosome evolutionsex determinationvertebrate evolution

Identifiers

PMID40694337
PMCPMC12318234

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.