Evidence map›Paper›PMID 40693864›Full record

ArticleAnalytical chemistry2025

Multilaboratory Untargeted Mass Spectrometry Metabolomics Collaboration to Identify Bottlenecks and Comprehensively Annotate A Single Dataset.

Joelle Houriet, Preston K Manwill, Armando Alcázar Magaña, Victoria M Anderson, Mehdi A Beniddir, Samuel Bertrand, Jaewoo Choi, Trevor N Clark, Leonard J Foster, Maria Halabalaki and 14 more

Abstract read
In one paragraph

Article in Analytical chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Joelle HourietDepartment of Chemistry & Biochemistry, University of North Carolina at Greensboro, Greensboro, North Carolina 27402, United States.
Preston K ManwillDepartment of Chemistry & Biochemistry, University of North Carolina at Greensboro, Greensboro, North Carolina 27402, United States.ORCID 0000-0002-6072-1067
Armando Alcázar MagañaLife Sciences Institute, Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.
Victoria M AndersonDepartment of Chemistry & Biochemistry, University of North Carolina at Greensboro, Greensboro, North Carolina 27402, United States.
Mehdi A BeniddirÉquipe "Chimie des substances naturelles" BioCIS, CNRS, Université Paris-Saclay, 17, avenue des Sciences, 91400 Orsay, France.ORCID 0000-0003-2153-4290
Samuel BertrandNantes Université, Institut des Substances et Organismes de la Mer, ISOMER, UR 2160, 44000 Nantes, France.ORCID 0000-0002-5934-7012
Jaewoo ChoiDepartment of Chemistry, Oregon State University, Corvallis, Oregon 97331, United States.
Trevor N ClarkDepartment of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
Leonard J FosterLife Sciences Institute, Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.ORCID 0000-0001-8551-4817
Maria HalabalakiDivision of Pharmacognosy and Natural Products Chemistry, Department of Pharmacy, National and Kapodistrian University of Athens, 157 71 Zographou, Greece.ORCID 0000-0001-5620-0165
Alan K JarmuschImmunity, Inflammation, and Disease Laboratory, Division of Intramural Research, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, North Carolina 27709, United States.ORCID 0000-0002-2228-6308
Niek F de JongeBioinformatics Group, Wageningen University & Research, Wageningen 6708 PB, The Netherlands.ORCID 0000-0002-3054-6210
Aswad KhadilkarDepartment of Chemistry & Biochemistry, University of California Santa Cruz, Santa Cruz, California 95064, United States.
John B MacMillanDepartment of Chemistry & Biochemistry, University of California Santa Cruz, Santa Cruz, California 95064, United States.ORCID 0000-0003-1430-1077
Claudia S MaierDepartment of Chemistry, Oregon State University, Corvallis, Oregon 97331, United States.
Luke C MarneyDepartment of Chemistry, Oregon State University, Corvallis, Oregon 97331, United States.
Guillaume MartiLaboratoire de Recherche en Sciences Végétales, Metatoul-AgromiX Platform, Université de Toulouse, CNRS, INP, 31320 Auzeville-Tolosane, France.ORCID 0000-0002-6321-9005
Eleni V MikropoulouDivision of Pharmacognosy and Natural Products Chemistry, Department of Pharmacy, National and Kapodistrian University of Athens, 157 71 Zographou, Greece.
Damien Olivier-JimenezCenter for Proteomics and Metabolomics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0002-6363-0857
Amélie PerezLaboratoire de Recherche en Sciences Végétales, Metatoul-AgromiX Platform, Université de Toulouse, CNRS, INP, 31320 Auzeville-Tolosane, France.ORCID 0000-0002-9956-4847
Justin J J van der HooftBioinformatics Group, Wageningen University & Research, Wageningen 6708 PB, The Netherlands.ORCID 0000-0002-9340-5511
Mitja M ZdoucBioinformatics Group, Wageningen University & Research, Wageningen 6708 PB, The Netherlands.
Roger G LiningtonDepartment of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.ORCID 0000-0003-1818-4971
Nadja B CechDepartment of Chemistry & Biochemistry, University of North Carolina at Greensboro, Greensboro, North Carolina 27402, United States.ORCID 0000-0001-6773-746X

Funding

Urgent Covid-19 Revision to the Center for High-Throughput Functional Annotation of Natural ProductsU41AT008718 · NCCIH · UT SOUTHWESTERN MEDICAL CENTER · PI CECH, NADJA B, LININGTON, ROGER G · 2015 to 2024
$10.1M
Mass Spectrometry-based Untargeted MetabolomicsZICES103363 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI JARMUSCH, ALAN · 2021 to 2025
$6.5M
Mechanisms underlying the cognitive effects of Centella asiatica water extract and constituent compounds in the 5xFAD mouse model of Alzheimer's DiseaseU19AT010829 · NCCIH · OREGON HEALTH & SCIENCE UNIVERSITY · PI MAIER, CLAUDIA S · 2020 to 2024
$6.1M
Intramural NIH HHS ZIC ES103363NCCIH NIH HHS U19 AT010829NCCIH NIH HHS U41 AT008718
6 · The paper itself

Abstract

Annotation is the process of assigning features in mass spectrometry metabolomics data sets to putative chemical structures or "analytes." The purpose of this study was to identify challenges in the annotation of untargeted mass spectrometry metabolomics datasets and suggest strategies to overcome them. Toward this goal, we analyzed an extract of the plant ashwagandha (

Indexed as

Mass SpectrometryMetabolomicsChromatography, Liquid

Identifiers

PMID40693864
PMCPMC12332825

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.