Evidence map›Paper›PMID 40693769›Full record

ArticleMicrobiology resource announcements2025

Using DNA affinity purification sequencing (DAP-seq) to identify

Kevin S Myers, Alexandra M Linz, Leo A Baumgart, Yu Zhang, Ian Blaby, Ritesh Mewalal, Vivian Ng, Daniel R Noguera, Timothy J Donohue

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. mSystems · 2025
    Article
  2. Article
  3. Transcriptomic data sets forMicrobiology resource announcements · 2025
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kevin S MyersWisconsin Energy Institute and Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID 0000-0003-3302-3877
Alexandra M LinzWisconsin Energy Institute and Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Leo A BaumgartU.S. Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Yu ZhangU.S. Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Ian BlabyU.S. Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Ritesh MewalalU.S. Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Vivian NgU.S. Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Daniel R NogueraWisconsin Energy Institute and Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID 0000-0003-0372-3063
Timothy J DonohueWisconsin Energy Institute and Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID 0000-0001-8738-2467

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome-wide binding sites of 44 putative transcription factors (TFs) from

Indexed as

aromatic metabolismbacteriaDAP-seqtranscription factor

Identifiers

PMID40693769
PMCPMC12352068

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.