Evidence map›Paper›PMID 40693147›Full record

ArticleFrontiers in microbiology2025

Genomic characterization of

Lydia M Mageto, Gabriel Oluga Aboge, Zelalem H Mekuria, Peter Gathura, John Juma, Michael Mugo, Collins Kipkorir Kebenei, Diana Imoli, Beatrice Atieno Ongadi, Kelvin Kering and 2 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Genome-wide investigation of outbreak-associatedFrontiers in microbiology · 2026
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Lydia M MagetoDepartment of Public Health, Pharmacology and Toxicology, Faculty of Veterinary Medicine, University of Nairobi, Nairobi, Kenya.
Gabriel Oluga AbogeDepartment of Public Health, Pharmacology and Toxicology, Faculty of Veterinary Medicine, University of Nairobi, Nairobi, Kenya.
Zelalem H MekuriaDepartment of Veterinary Preventive Medicine, College of Veterinary Medicine, The Ohio State University, Columbus, OH, United States.
Peter GathuraDepartment of Public Health, Pharmacology and Toxicology, Faculty of Veterinary Medicine, University of Nairobi, Nairobi, Kenya.
John JumaInternational Livestock Research Institute (ILRI), Nairobi, Kenya.
Michael MugoCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Collins Kipkorir KebeneiCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Diana ImoliCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Beatrice Atieno OngadiCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Kelvin KeringCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Cecilia Kathure MbaeCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Samuel KariukiCentre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.

Funding

Zoonotic and Emerging Infectious Diseases Training ProgramD43TW011519 · FIC · WASHINGTON STATE UNIVERSITY · PI Walter Godfrey Jaoko, Thumbi Mwangi · 2020 to 2026
$1.2M
FIC NIH HHS D43 TW011519
6 · The paper itself

Abstract

Background: Cholera remains a public health challenge in Kenya. To better understand its dynamics, we analyzed Methods: Clinical (stool) and environmental (wastewater, drinking water, and household effluent) samples were collected from Nairobi county. Samples were analyzed for Results: Clinical isolates carried key virulence genes ( Conclusion: The 2022-2023 outbreak likely resulted from re-emergence of previously circulating strains rather than a new introduction. While the role of environmental reservoirs as a source of human infection remains unclear in our study, environmental isolates possess virulent and antimicrobial resistance genes that may spread via horizontal gene transfer. This highlights the need for continuous genomic surveillance to monitor

Indexed as

antimicrobial resistancecholeraphylogenetic analysisvirulencewhole genome sequencing

Identifiers

PMID40693147
PMCPMC12277283

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.