Evidence map›Paper›PMID 40692433›Full record

ArticleJournal of chemical information and modeling2025

Dynamic Training Enhances Machine Learning Potentials for Long-Lasting Molecular Dynamics.

Ivan Žugec, Tin Hadži Veljković, Maite Alducin, J Iñaki Juaristi

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ivan ŽugecCentro de Física de Materiales CFM/MPC, CSIC-UPV/EHU, Paseo Manuel de Lardizabal 5, Donostia-San Sebastián 20018, Spain.ORCID 0009-0007-1259-6744
Tin Hadži VeljkovićUvA-Bosch Delta Lab, University of Amsterdam, Amsterdam Science Park 904, Amsterdam 1098 XH, Netherlands.
Maite AlducinCentro de Física de Materiales CFM/MPC, CSIC-UPV/EHU, Paseo Manuel de Lardizabal 5, Donostia-San Sebastián 20018, Spain.ORCID 0000-0002-1264-7034
J Iñaki JuaristiCentro de Física de Materiales CFM/MPC, CSIC-UPV/EHU, Paseo Manuel de Lardizabal 5, Donostia-San Sebastián 20018, Spain.ORCID 0000-0002-4208-8464

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular dynamics (MD) simulations are vital for exploring complex systems in computational physics and chemistry. While machine learning methods dramatically reduce computational costs relative to ab initio methods, their accuracy in long-lasting simulations remains limited. Here we propose dynamic training (DT), a method designed to enhance accuracy of a model over extended MD simulations. Applying DT to an equivariant graph neural network (EGNN) on the challenging system of a hydrogen molecule interacting with a palladium cluster anchored to a graphene vacancy demonstrates a superior prediction accuracy compared to conventional approaches. Crucially, the DT architecture-independent design ensures its applicability across diverse machine learning potentials, making it a practical tool for advancing MD simulations.

Indexed as

Machine LearningMolecular Dynamics SimulationGraphiteHydrogenNeural Networks, ComputerPalladiumGraphiteHydrogenPalladium

Identifiers

PMID40692433
PMCPMC12344694

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.