Evidence map›Paper›PMID 40691552›Full record

ArticleBMC microbiology2025

Multi-host distribution of Rhodococcus equi (Prescottella equi) strains and their phylogenomic clustering.

Giovanni Ghielmetti, Marc J A Stevens, Sarah Schmitt, Sonja Kittl, Nicole Cernela, Michael Biggel, Bettina Schulthess, Peter M Keller, Jacques Schrenzel, Roger Stephan

Abstract read
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Pleuropneumonia and mediastinitis caused byFrontiers in veterinary science · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Giovanni GhielmettiInstitute for Food Safety and Hygiene, Section of Veterinary Bacteriology, University of Zurich, Winterthurerstrasse 270, Zurich, 8057, Switzerland. giovanni.ghielmetti@uzh.ch.
Marc J A StevensInstitute for Food Safety and Hygiene, University of Zurich, Winterthurerstrasse 272, Zurich, 8057, Switzerland.
Sarah SchmittInstitute for Food Safety and Hygiene, Section of Veterinary Bacteriology, University of Zurich, Winterthurerstrasse 270, Zurich, 8057, Switzerland.
Sonja KittlInstitute of Veterinary Bacteriology, Department of Infectious Diseases and Pathobiology, University of Bern, Laenggassstrasse 122, Bern, 3001, Switzerland.
Nicole CernelaInstitute for Food Safety and Hygiene, University of Zurich, Winterthurerstrasse 272, Zurich, 8057, Switzerland.
Michael BiggelInstitute for Food Safety and Hygiene, University of Zurich, Winterthurerstrasse 272, Zurich, 8057, Switzerland.
Bettina SchulthessInstitute of Medical Microbiology, University of Zurich, Gloriastrasse 28/30, Zurich, 8006, Switzerland.
Peter M KellerInstitute for Infectious Diseases, University of Bern, Friedbühlstrasse 51, Bern, 3010, Switzerland.
Jacques SchrenzelBacteriology Laboratory, Division of Laboratory Medicine, Department of Diagnostics, Geneva University Hospitals, Rue Gabrielle-Perret-Gentil 4, Geneva, 1211, Switzerland.
Roger StephanInstitute for Food Safety and Hygiene, Section of Veterinary Bacteriology, University of Zurich, Winterthurerstrasse 270, Zurich, 8057, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRhodococcus equi is an intracellular bacterial pathogen that can cause infections in various hosts, including humans and animals. Host-associated virulence plasmids have been identified as key contributors to the pathogenicity of R. equi and potentially play a role in determining the host tropism of the bacteria. The investigation of additional clinical and environmental isolates is likely to provide novel insights into the population structure, infection pathways, and drug resistance of this important pathogen. We combined whole-genome sequencing and antimicrobial-susceptibility testing of 37 selected R. equi isolates from animal, human, and environmental sources, collected in Switzerland over a 21 year period. In addition, we gathered a total of 251 whole-genome sequences and 141 multi-locus sequence (MLST) typing records from public sources. Although large geographical areas are not represented due to missing genomes we used a phylogenetic approach to define diversity patterns, distribution, and host tropism of R. equi.

resultsHorse isolates, irrespective of the country of isolation, exhibited distinct sequence types (ST), notably ST-1 and ST-24 among others, and carried the VAPA plasmid, implying a strain-specific affinity for particular plasmid types. Several STs including ST-62 and ST-76 associated with the VAPN plasmid included both human and ruminant isolates from Switzerland, hinting at a potential common infection source. Similarly, isolates from porcine and human sources, documented in various European countries and China, exhibited common ST, including ST-18 and ST-36, and were found to harbour VAPB plasmids upon testing, suggesting potential zoonotic implications.

conclusionsUsing a genomic approach we report host-specific strains that serve as carriers of virulence-associated plasmids, indicating an adaptation strategy within distinct R. equi lineages. The existence of shared plasmid profiles between farm animals and humans suggests a common infection source. Our results contribute to an improved understanding of the global genetic diversity of virulent and environmental R. equi strains, which will benefit from additional molecular epidemiological studies including strains from unrepresented geographical areas.

Indexed as

Actinomycetales InfectionsPhylogenyRhodococcus equiAnimalsAnti-Bacterial AgentsGenome, BacterialHorse DiseasesHorsesHumansMicrobial Sensitivity TestsMultilocus Sequence TypingPlasmidsSwitzerlandVirulenceVirulence FactorsWhole Genome SequencingAnti-Bacterial AgentsVirulence FactorsComparative genomicsHost-associated virulence plasmidsHost tropismPhylogenomicsRhodococcus equiSusceptibility testing

Identifiers

PMID40691552
PMCPMC12278488

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.