Evidence map›Paper›PMID 40690529›Full record

ArticlePLoS genetics2025

Reversion of a RND transporter pseudogene reveals latent stress resistance potential in Brucella ovis.

Thomas Kim, Bongjin Hong, Rosemary Northcote, Thomas V O'Halloran, Erika Lisabeth, Richard R Neubig, Aretha Fiebig, Sean Crosson

Abstract read
In one paragraph

Article in PLoS genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. A genome-wide CRISPR screen defines host determinants of earlybioRxiv : the preprint server for biology · 2026
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Thomas KimDepartment of Microbiology, Genetics & Immunology, Michigan State University, East Lansing, Michigan, United States of America.ORCID https://orcid.org/0009-0000-4930-5401
Bongjin HongDepartment of Microbiology, Genetics & Immunology, Michigan State University, East Lansing, Michigan, United States of America.
Rosemary NorthcoteDepartment of Microbiology, Genetics & Immunology, Michigan State University, East Lansing, Michigan, United States of America.ORCID https://orcid.org/0009-0002-7780-6355
Thomas V O'HalloranDepartment of Microbiology, Genetics & Immunology, Michigan State University, East Lansing, Michigan, United States of America.
Erika LisabethDepartment of Pharmacology & Toxicology, Michigan State University, East Lansing, Michigan, United States of America.
Richard R NeubigDepartment of Pharmacology & Toxicology, Michigan State University, East Lansing, Michigan, United States of America.ORCID https://orcid.org/0000-0003-0501-0008
Aretha FiebigDepartment of Microbiology, Genetics & Immunology, Michigan State University, East Lansing, Michigan, United States of America.
Sean CrossonDepartment of Microbiology, Genetics & Immunology, Michigan State University, East Lansing, Michigan, United States of America.ORCID https://orcid.org/0000-0002-1727-322X

Funding

TR&D Project 3: Photoacoustic Detection of Metal Fluxes at the Tissue LevelP41GM135018 · NIGMS · NORTHWESTERN UNIVERSITY · PI MACRENARIS, KEITH W · 2020 to 2024
$5.8M
Metalloregulation by MerR and Fur Protein FamiliesR01GM038784 · NIGMS · NORTHWESTERN UNIVERSITY · PI O'HALLORAN, THOMAS V · 1992 to 2025
$3.5M
Regulation of the Brucella abortus general stress responseR01AI177619 · NIAID · MICHIGAN STATE UNIVERSITY · PI Sean Crosson · 2024 to 2026
$1.5M
NIAID NIH HHS R01 AI177619NIGMS NIH HHS P41 GM135018NIGMS NIH HHS R01 GM038784
6 · The paper itself

Abstract

Small-molecule screens can advance therapeutic discovery and uncover new features of pathogen biology. Through a luminescence-based screen, we identified clinically approved dihydropyridines that impaired fitness of the intracellular pathogen Brucella ovis in mammalian phagocytes. Given that dihydropyridines block mammalian L-type calcium channels, and based on our observation that drug treatment perturbed calcium and manganese levels in host phagocytes, we initially hypothesized a host-directed mechanism of action. However, dose-response assays in axenic medium showed that dihydropyridines have direct antimicrobial effects. To explore the genetic basis of dihydropyridine sensitivity, we selected for B. ovis mutants capable of growing in the presence of cilnidipine, a representative compound from this drug class. Cilnidipine-resistant mutants harbored single-nucleotide deletions in the bepE transporter pseudogene that restored its open reading frame, enabling expression of a functional RND-family transporter. B. ovis is a host-restricted ovine pathogen that has experienced significant pseudogenization in its recent evolutionary history. Reversion mutations that restored the open reading frame of the bepE pseudogene increased B. ovis resistance not only to dihydropyridines but also to a broad range of cell envelope-disrupting agents. Conversely, deleting bepE in Brucella abortus, a closely related zoonotic species that retains an intact version of the gene, increased its sensitivity to envelope disruptors in vitro and to cilnidipine in the intracellular niche. We conclude that bepE is a key determinant of chemical stress resistance in Brucella spp., and that its pseudogenization in B. ovis contributes to the documented hypersensitivity of this host-restricted lineage to chemical stressors.

Indexed as

Brucella ovisBrucellosisDrug Resistance, BacterialPseudogenesStress, PhysiologicalAnimalsDihydropyridinesMutationSheepDihydropyridines

Identifiers

PMID40690529
PMCPMC12306736

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.