Evidence map›Paper›PMID 40688387›Full record

ArticleGastro hep advances2025

Risk Prediction in Patients With Metabolic Dysfunction-Associated Steatohepatitis Using Natural Language Processing.

Jordan Guillot, Christopher Y K Williams, Shadera Azzam, Balu Bhasuran, Gail Fernandes, Boshu Ru, Joe Yang, Xiao Zhang, R Ravi Shankar, Jin Ge and 1 more

Abstract read
In one paragraph

Article in Gastro hep advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jordan GuillotBakar Computational Health Sciences Institute, University of California, San Francisco, California.
Christopher Y K WilliamsBakar Computational Health Sciences Institute, University of California, San Francisco, California.
Shadera AzzamBakar Computational Health Sciences Institute, University of California, San Francisco, California.
Balu BhasuranBakar Computational Health Sciences Institute, University of California, San Francisco, California.
Gail FernandesMerck & Co., Inc., Rahway, New Jersey.
Boshu RuMerck & Co., Inc., Rahway, New Jersey.
Joe YangMerck & Co., Inc., Rahway, New Jersey.
Xiao ZhangMerck & Co., Inc., Rahway, New Jersey.
R Ravi ShankarMerck & Co., Inc., Rahway, New Jersey.
Jin GeBakar Computational Health Sciences Institute, University of California, San Francisco, California.
Vivek A RudrapatnaBakar Computational Health Sciences Institute, University of California, San Francisco, California.

Funding

A data science framework for transforming electronic health records into real-world evidenceR00LM014099 · NLM · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Vivek Ashok Rudrapatna · 2025 to 2026
$498k
A data science framework for transforming electronic health records into real-world evidenceK99LM014099 · NLM · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RUDRAPATNA, VIVEK ASHOK · 2023 to 2024
$178k
NLM NIH HHS K99 LM014099NLM NIH HHS R00 LM014099
6 · The paper itself

Abstract

Background and Aims: Metabolic dysfunction-associated steatohepatitis (MASH) is a highly heterogenous condition and a leading cause of end-stage liver disease. Understanding disease progression in real-world settings remains a major unmet need. We sought to define a real-world MASH cohort using natural language processing (NLP) and identify significant associations with all-cause mortality and progression to cirrhosis and liver transplantation. Methods: We developed, validated, and applied a novel NLP algorithm, "NASHDetection," to identify patients at the University of California San Francisco who were diagnosed with MASH between 2012 and 2022. We used Cox regression with bidirectional stepwise variable selection to identify significant associations with outcomes. Results: NASHDetection was 86% accurate at identifying 2695 MASH patients. At the time of their diagnosis, the median age was 57 years; 55.4% had cirrhosis at baseline, with 34.0% having evidence of decompensation and 10.8% with hepatocellular carcinoma. The most common comorbidities were hypertension (61.9%), hyperlipidemia (47.4%), and type 2 diabetes mellitus (41.5%). Multiple comorbidities were associated with all-cause mortality, including type 2 diabetes mellitus (hazard ratio (HR): 1.36; confidence interval (CI): 1.07-1.73), heart failure (HR: 1.45; CI: 1.01-2.08), and peripheral artery disease (HR: 1.72; CI: 1.04-2.85). Significant laboratory-based predictors of mortality included high-low-density lipoprotein cholesterol (HR: 1.49; CI: 1.20-1.84) and high alkaline phosphatase (HR: 1.94; CI: 1.58-2.38). Conclusion: We described a cohort of real-world MASH patients using a new NLP algorithm and found several potential predictors of progression to all-cause mortality, cirrhosis, and liver transplantation. The use of NLP to characterize these patients can help support the development of future interventional trials in MASH.

Indexed as

CirrhosisMetabolic Dysfunction–Associated Steatotic Liver DiseaseNatural Language ProcessingReal-World Evidence

Identifiers

PMID40688387
PMCPMC12271788

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.