Evidence map›Paper›PMID 40688095›Full record

ArticlePNAS nexus2025

Genetic score omics regression and multitrait meta-analysis detect widespread

Ruidong Xiang, Lingzhao Fang, Shuli Liu, George E Liu, Albert Tenesa, Yahui Gao, Brett A Mason, Amanda J Chamberlain, Michael E Goddard, CattleGTEx Consortium

Abstract read
In one paragraph

Article in PNAS nexus, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Integrating extensive functional annotations and multiomics of cattle enhances climate resilience prediction and mapping.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ruidong XiangAgriculture Victoria, AgriBio, Centre for AgriBiosciences, Bundoora, VIC 3083, Australia.ORCID https://orcid.org/0000-0002-1584-7605
Lingzhao FangMRC Human Genetics Unit at the Institute of Genetics and Cancer, The University of Edinburgh, Edinburgh EH4 2XU, United Kingdom.
Shuli LiuWestlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang 310024, China.ORCID https://orcid.org/0009-0006-8379-4994
George E LiuAnimal Genomics and Improvement Laboratory, Henry A. Wallace Beltsville Agricultural Research Center, Agricultural Research Service, USDA, Beltsville, MD 20705, USA.ORCID https://orcid.org/0000-0003-0192-6705
Albert TenesaMRC Human Genetics Unit at the Institute of Genetics and Cancer, The University of Edinburgh, Edinburgh EH4 2XU, United Kingdom.ORCID https://orcid.org/0000-0003-4884-4475
Yahui GaoAnimal Genomics and Improvement Laboratory, Henry A. Wallace Beltsville Agricultural Research Center, Agricultural Research Service, USDA, Beltsville, MD 20705, USA.
Brett A MasonAgriculture Victoria, AgriBio, Centre for AgriBiosciences, Bundoora, VIC 3083, Australia.
Amanda J ChamberlainAgriculture Victoria, AgriBio, Centre for AgriBiosciences, Bundoora, VIC 3083, Australia.
Michael E GoddardAgriculture Victoria, AgriBio, Centre for AgriBiosciences, Bundoora, VIC 3083, Australia.
CattleGTEx Consortium

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To complete the genome-to-phenome map, transcriptome-wide association studies (TWAS) are performed to correlate genetically predicted gene expression with observed phenotypic measurements. However, the relatively small training population assayed with gene expression could limit the accuracy of TWAS. We propose genetic score omics regression (GSOR) correlating observed gene expression with genetically predicted phenotype, i.e. estimated breeding values (EBVs) in agriculture or polygenic score (PGS) in medicine. The score, calculated using variants near genes with assayed expression (

Identifiers

PMID40688095
PMCPMC12275098

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.