ArticleHorticulture research2025
Deciphering octoploid strawberry evolution with serial LTR similarity matrices for subgenome partition.
Article in Horticulture research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
2 citing papers in PubMed.
- A chromosome-level genome assembly of Coffea arabica L. var. 'Kona Typica'.Scientific data · 2025Article
- Haplotype-resolved genome assembly of the tetraploid Youcha tree Camellia meiocarpa Hu.Scientific data · 2025Article
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Authors and funding
4 authors.
Funding
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Abstract
Polyploidization has been recognized as a major force in plant evolution. With the continuous progress in sequencing technologies and genome assembly algorithms, high-quality chromosome-level assemblies of polyploid genomes have become increasingly attainable. However, accurately delineating these assemblies into subgenomes remains a challenging task, especially in cases where known diploid ancestors are absent. In this study, we introduce a novel approach that leverages long terminal repeat retrotransposons (LTR-RTs) coupled with the serial similarity matrix (SSM) method to assign genome assemblies to subgenomes, particularly beneficial for those without known diploid progenitor genomes. The SSM method helps identify subgenome-specific LTRs and facilitates the inference of the timing of allopolyploidization events. We validated the efficacy of the SSM approach using well-studied allopolyploid genomes,
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Registered trials
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