Evidence map›Paper›PMID 40684262›Full record

ArticlePlant communications2025

A bHLH7-PDF2 module mediates transcriptional regulation to repress seed oil accumulation in Arabidopsis thaliana.

Zijin Liu, Yu Zhao, Lianying Mao, Dong Li, Bo Song, Minshan Jin, Jun Ma, Jianjun Wang, Shuangcheng He, Shixiang Wang and 4 more

Abstract read
In one paragraph

Article in Plant communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Zijin LiuState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Yu ZhaoState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Lianying MaoState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Dong LiState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Bo SongState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Minshan JinState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Jun MaState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Jianjun WangState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Shuangcheng HeState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Shixiang WangState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Huan HuState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Yuan GuoState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Saiqi YangState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
Mingxun ChenState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, National Yangling Agricultural Biotechnology & Breeding Center, Shaanxi Key Laboratory of Crop Heterosis, and College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China. Electronic address: cmx786@nwafu.edu.cn.

Funding

Non-US Government Research Support type
6 · The paper itself

Abstract

Seed oil accumulation requires precise coordination of multiple factors, and transcription factors (TFs) play crucial roles in governing this process. However, details of how TFs and crosstalk between different TF families coordinate the transcriptional network associated with seed oil accumulation remain to be clarified. Here, we report that basic helix-loop-helix7 (bHLH7) and PROTODERMAL FACTOR2 (PDF2) TFs, both highly expressed in developing embryos, negatively control seed oil accumulation. bHLH7 and PDF2 physically interact and cooperatively inhibit the transcription of MYB DOMAIN PROTEIN 96 (MYB96), PYRUVATE DEHYDROGENASE E1 BETA1 (PDH-E1β1), PDH-E1β2, and BIOTIN CARBOXYL CARRIER PROTEIN1 (BCCP1) by directly binding to their promoters. Additional genetic evidence demonstrated that bHLH7 and PDF2 act in an additive manner to repress seed oil accumulation, and this effect is partially dependent on PDH-E1β1, which significantly promotes seed oil deposition. Collectively, our results provide insights into the mechanisms by which the bHLH7-PDF2 module mediates transcriptional regulation to control oil accumulation in A. thaliana seeds.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantPlant OilsSeedsTranscription FactorsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsPlant OilsTranscription FactorsbHLH7PDF2PDH-E1β1seed oil accumulationtranscription factors

Identifiers

PMID40684262
PMCPMC12447430

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.