Evidence map›Paper›PMID 40683884›Full record

ArticleNature communications2025

Single nucleosome imaging reveals principles of transient multiscale chromatin reorganization triggered by histone ADP-ribosylation at DNA lesions.

Fabiola García Fernández, Junwoo Park, Catherine Chapuis, Eva Pinto Jurado, Victor Imburchia, Rebecca Smith, Edoardo José Longarini, Angela Taddei, Christian Hubert, Nataliya Sokolovska and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Fabiola García FernándezLaboratory of Computational,Quantitative and Synthetic Biology, CNRS, Institut de Biologie Paris-Seine, Sorbonne Université, Paris, France.
Junwoo ParkLaboratory of Computational,Quantitative and Synthetic Biology, CNRS, Institut de Biologie Paris-Seine, Sorbonne Université, Paris, France.ORCID http://orcid.org/0009-0000-6126-2125
Catherine ChapuisUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes)-UMR 6290, BIOSIT-UMS 3480, Rennes, France.ORCID http://orcid.org/0000-0002-3765-0969
Eva Pinto JuradoUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes)-UMR 6290, BIOSIT-UMS 3480, Rennes, France.
Victor ImburchiaUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes)-UMR 6290, BIOSIT-UMS 3480, Rennes, France.
Rebecca SmithUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes)-UMR 6290, BIOSIT-UMS 3480, Rennes, France.
Edoardo José LongariniDoctoral School of Multidisciplinary Medical Sciences, University of Szeged, Szeged, Hungary.
Angela TaddeiInstitut Curie, Université PSL, Sorbonne University, CNRS, Nuclear Dynamics, Paris, France.ORCID http://orcid.org/0000-0002-3217-0739
Christian HubertErrol laser, Saint Maur des Fossés, France.
Nataliya SokolovskaLaboratory of Computational,Quantitative and Synthetic Biology, CNRS, Institut de Biologie Paris-Seine, Sorbonne Université, Paris, France.
Ivan MatićResearch Group of Proteomics and ADP-Ribosylation Signaling, Max Planck Institute for Biology of Ageing, Cologne, Germany.ORCID http://orcid.org/0000-0003-0170-7991
Sébastien HuetUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes)-UMR 6290, BIOSIT-UMS 3480, Rennes, France. sebastien.huet@univ-rennes.fr.ORCID http://orcid.org/0000-0002-3978-0003
Judith Miné-HattabLaboratory of Computational,Quantitative and Synthetic Biology, CNRS, Institut de Biologie Paris-Seine, Sorbonne Université, Paris, France. judith.mine-hattab@sorbonne-universite.fr.

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-24-INBS-0005 FBI BIOGEN
6 · The paper itself

Abstract

Timely access to DNA lesions is crucial for genome integrity. This process requires profound remodeling of densely packed chromatin to establish a repair-competent architecture. However, limited resolution has made it impossible to fully understand these remodeling events. Here, combining microirradiation with live-cell multiscale imaging, we report that DNA damage-induced changes in genome packing rely on the conformational behaviour of the chromatin fiber. Immediately after damage, a transient increase in nucleosome mobility switches chromatin from a densely-packed state to a looser conformation, making it accessible to repair. While histone poly-ADP-ribosylation is required to trigger this switch, mono-ADP-ribosylation is sufficient to maintain the open-chromatin state. The removal of these histone marks by the ARH3 hydrolase then leads to chromatin recondensation. Together, our multiscale study of chromatin dynamics establishes a global model: distinct waves of histone ADP-ribosylation control nucleosome mobility, triggering a transient breathing of chromatin, crucial for initiating the DNA damage response.

Indexed as

ADP-RibosylationChromatinChromatin Assembly and DisassemblyDNA DamageHistonesNucleosomesDNADNA RepairHumansChromatinDNAHistonesNucleosomes

Identifiers

PMID40683884
PMCPMC12276361

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.