Evidence map›Paper›PMID 40682786›Full record

ArticlePhysiologia plantarum

A Novel Multivariate Analysis: Overturning Long-Held Beliefs About Non-Photochemical Quenching.

Lennart A I Ramakers, Jeremy Harbinson, Herbert van Amerongen

Abstract read
In one paragraph

Article in Physiologia plantarum. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Lennart A I RamakersLaboratory of Biophysics, Wageningen University, Wageningen, the Netherlands.ORCID https://orcid.org/0009-0004-0560-1400
Jeremy HarbinsonLaboratory of Biophysics, Wageningen University, Wageningen, the Netherlands.ORCID https://orcid.org/0000-0002-0607-4508
Herbert van AmerongenLaboratory of Biophysics, Wageningen University, Wageningen, the Netherlands.ORCID https://orcid.org/0000-0002-9783-2895

Funding

Nederlandse Organisatie voor Wetenschappelijk Onderzoek OCENW.GROOT.2019.86
6 · The paper itself

Abstract

When light absorption exceeds photochemical quenching, plants activate non-photochemical quenching (NPQ) to dissipate excess energy as heat. Recently, we have developed a novel multivariate pipeline for NPQ induction analysis. Applying this pipeline to NPQ induction curves of several Arabidopsis thaliana NPQ genotypes, overturns the long-held belief that zeaxanthin (Zx) accelerates NPQ induction upon light-adaptation. We demonstrate that the observed acceleration is solely due to the action of PsbS. Our approach allows the synergistic inter-relationships between PsbS and Zx to be unambiguously explored. Specifically, we applied our analysis to dark- and light-adapted wild-type (wt), Zx-lacking (npq1), Zx-rich (npq2) and PsbS-lacking (npq4) A. thaliana. Only the PsbS-dependent quenching in npq2, wt and npq1 plants exhibited faster induction kinetics following light adaptation. Changes in the Zx-levels (npq1 → wt → npq2) lead to changes in the overall amplitudes of the PsbS-components, revealing a Zx-driven amplification of PsbS-dependent quenching. In the presence of PsbS (npq2/wt), Zx also provides its own distinct contribution to NPQ. Together, this reveals the distinct roles of Zx in NPQ and the multilayered synergistic relationship between PsbS and Zx. Combined with mutant genotypes, our unique analysis is an invaluable toolkit to answer mechanistic questions and will allow different NPQ models to be experimentally explored.

Indexed as

ArabidopsisArabidopsis ProteinsGenotypeLightMultivariate AnalysisPhotosystem II Protein ComplexZeaxanthinsArabidopsis ProteinsPhotosystem II Protein ComplexZeaxanthinsdark‐ and light‐adapted leavesmultivariate analysisnon‐photochemical quenchingPsbSzeaxanthin

Identifiers

PMID40682786
PMCPMC12275998

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.