Evidence map›Paper›PMID 40682537›Full record

ArticleBiochemistry2025

The pH-Dependent Specificity of Cathepsin S and Its Implications for Inflammatory Communications and Disease.

Riley DeHority, Laura I Gil Pineda, Kari Cochran, Bentley Chen, Daniel Bratek, Richard F Helm, Justin A Lemkul, Chenming Zhang

Abstract read
In one paragraph

Article in Biochemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Riley DeHorityDepartment of Biological Systems Engineering, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, United States.
Laura I Gil PinedaDepartment of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, United States.
Kari CochranDepartment of Biological Systems Engineering, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, United States.
Bentley ChenDepartment of Biological Systems Engineering, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, United States.
Daniel BratekDepartment of Biological Systems Engineering, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, United States.
Richard F HelmDepartment of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, United States.
Justin A LemkulDepartment of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, United States.ORCID 0000-0001-6661-8653
Chenming ZhangDepartment of Biological Systems Engineering, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, United States.ORCID 0000-0002-6770-5334

Funding

Novel nanovaccines against opioid use disordersUG3DA048775 · NIDA · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI PRAVETONI, MARCO, ZHANG, CHENMING M · 2019 to 2020
$3.1M
NIDA NIH HHS UG3 DA048775
6 · The paper itself

Abstract

Proteases have two major roles in health and disease: making functional changes to proteins as a post-translational modification and degradation of proteins as a regulatory or waste management mechanism. The cysteine protease cathepsin S serves both of these functions. It digests antigens in the adaptive immune system and is associated with many autoimmune diseases and cancers. Here, we show that the catalytic specificity of human cathepsin S is regulated by the pH conditions of its environment and identify the structural determinants of this switch. Peptide digests show that the proteolytic specificity of cathepsin S narrows at extracellular pH. Crystal structures reveal that a lysine residue descends into the S3 pocket of the active site above pH 7, which can be explained by changes in the protein's surface charge at that pH. We discuss biological compartment transitions and disease processes associated with cathepsin S in which these pH-dependent specificity switches may be triggered.

Indexed as

CathepsinsInflammationCatalytic DomainCrystallography, X-RayHumansHydrogen-Ion ConcentrationModels, MolecularProteolysisSubstrate Specificitycathepsin SCathepsins

Identifiers

PMID40682537
PMCPMC12444987

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Read underepoch 390

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.