Evidence map›Paper›PMID 40682483›Full record

ArticleJournal of clinical periodontology2025

Genetic Loci Associated With Periodontitis: The FinnGen Study Based on National Health Registers.

Aino Salminen, Kati Hyvärinen, Jarmo Ritari, Ana Caetano, Oleg Kambur, Päivi Mäntylä, Mustafa Yilmaz, Juha Sinisalo, FinnGen, Markus Perola and 4 more

Abstract read
In one paragraph

Article in Journal of clinical periodontology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Microbial dysbiosis and immune dysregulation in periodontitis and peri-implantitis.Frontiers in cellular and infection microbiology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Aino SalminenOral and Maxillofacial Diseases, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.
Kati HyvärinenFinnish Red Cross Blood Service, Research and Development, Helsinki, Finland.
Jarmo RitariFinnish Red Cross Blood Service, Research and Development, Helsinki, Finland.
Ana CaetanoInstitute of Dentistry, Barts and the London School of Medicine and Dentistry, Queen Mary University of London, London, UK.
Oleg KamburFinnish Institute for Health and Welfare (THL), Helsinki, Finland.
Päivi MäntyläSchool of Medicine, Institute of Dentistry, University of Eastern Finland, Kuopio, Finland.ORCID 0000-0003-2091-972X
Mustafa YilmazDepartment of Periodontology, Faculty of Dentistry, Biruni University, Istanbul, Turkey.ORCID 0000-0002-2005-1417
Juha SinisaloHUCH Heart and Lung Center, Helsinki University Hospital and University of Helsinki, Helsinki, Finland.
FinnGen
Markus PerolaFinnish Institute for Health and Welfare (THL), Helsinki, Finland.
Aki HavulinnaFinnish Institute for Health and Welfare (THL), Helsinki, Finland.
Luigi NibaliPeriodontology Unit, Centre for Host Microbiome Interactions, Faculty of Dentistry, Oral and Craniofacial Sciences, King's College London, London, UK.ORCID 0000-0002-7750-5010
Ulvi Kahraman GürsoyDepartment of Periodontology, Institute of Dentistry, University of Turku, Turku, Finland.ORCID 0000-0002-1225-5751
Pirkko J PussinenOral and Maxillofacial Diseases, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.ORCID 0000-0003-3563-1876

Funding

AbbVie Inc.Academy of FinlandAstraZeneca UK Ltd.Biogen MA Inc.Boehringer Ingelheim International GmbHBristol Myers Squibb (and Celgene Corporation & Celgene International II Sàrl)Business Finland 4685/31/2016Business Finland UH 4386/31/2016Finnish Foundation for Cardiovascular ResearchGenentech Inc.GlaxoSmithKline Intellectual Property Development Ltd.Janssen Biotech Inc.Maze Therapeutics Inc.Merck Sharp & Dohme LLCNovartis AGNovo Nordisk FondenPaulo FoundationPfizer Inc.Sanofi US Services Inc.Sigrid Juséliuksen SäätiöSuomen Hammaslääkäriseura ApolloniaSydäntutkimussäätiö
6 · The paper itself

Abstract

aimTo perform a genome-wide association study (GWAS) for periodontitis in the FinnGen cohort, as genetic factors contribute to periodontitis. MATERIALS AND

methodsWe included nearly 250,000 Finnish individuals who had visited a dentist in the public healthcare sector for a clinical oral examination. We designed three periodontitis phenotypes based on diagnosis and procedure codes and CPI indexes in national health registers.

resultsWe identified 11 independent genetic loci associated with periodontitis, among which 6 were common and novel. A locus near the FST gene was associated with two phenotypes, whereas other lead SNPs were located near ARL15, MFHAS1, DEFB130A and APOE. Additionally, all phenotypes in the discovery and replication cohorts were associated with genetic variations in the HLA region. Furthermore, imputed HLA allele frequencies identified independent associations between HLA-DRB1, HLA-DPB1 and HLA-DQA1 and periodontitis. Based on single-cell RNA sequencing, the expression of genes near our lead SNPs across all three phenotypes was particularly enriched in gingival cell lineages important in the pathogenesis of periodontitis. Phenotypical and genetic correlations revealed associations between periodontitis and bacterial diseases, as well as autoimmune and cardiometabolic phenotypes.

conclusionsOur GWAS suggests that genetic variation contributing to immune dysregulation is involved in the pathogenesis of periodontitis, which has considerable genetic similarity with other complex traits.

Indexed as

Genetic LociGenetic Predisposition to DiseasePeriodontitisAdultFemaleFinlandGene FrequencyGenome-Wide Association StudyHumansMaleMiddle AgedPhenotypePolymorphism, Single NucleotideRegistriescardiovascular disease(s)epidemiologygeneticsimmunityperiodontal disease(s)/periodontitis

Identifiers

PMID40682483
PMCPMC12377943

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.