Evidence map›Paper›PMID 40682024›Full record

ArticleBMC plant biology2025

Integrated volatile metabolomic and transcriptomic analysis provides insights into the regulation of odor components between two Ferula species.

Zhijia Tian, Jingyi Zhao, Mei Wang, Xiangxue Yu, Qian Li, Bo Chen, Li Zhang, Xinyong Guo

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zhijia Tian *College of Life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Jingyi Zhao *College of Life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Mei WangCollege of Life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Xiangxue YuCollege of Life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Qian LiCollege of Life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Bo ChenCollege of Life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Li ZhangCollege of Medicine, Shihezi University, Shihezi City, 832003, Xinjiang, China. zl491191385@163.com.
Xinyong GuoCollege of Life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China. guoxinyong2013@163.com.

Funding

Corps Financial Science and Technology Programme 2022DB017National Natural Science Foundation of China 32160071Shihezi University Science and Technology Courtyard Construction Project ZG009204
6 · The paper itself

Abstract

backgroundFerula (Apiaceae), a genus of perennial herbs with significant medicinal and culinary value, derives its characteristic odor primarily from volatile organic compounds (VOCs), particularly volatile sulfur compounds (VSCs) and terpenoids. Despite their economic importance, two critical gaps hinder targeted utilization: Ferula species-specific VOCs remains undocumented, and the metabolic pathways and key genes of VSCs and terpenoids in Ferula are still unclear.

resultsVolatile metabolomic and transcriptomic analyses were performed on two species of Ferula-viz., Ferula sinkiangensis K. M. Shen (XJ, strong odor) and Ferula ferulaeoides (Steud.) Korov (DS, bland odor). A total of 561 VOCs were annotated, with VSCs dominating XJ (45.98%) and terpenoids prevailing in DS (44.01%). The results VSCs were the primary source of the strong odor in XJ. In total, 42,817 differentially expressed genes (DEGs) were identified between XJ and DS in this study. KEGG pathway enrichment analysis of DEGs revealed significant divergence in the biosynthetic pathways of VSCs and terpenoids between the two Ferula species. Integrative multi-omics analysis identified 87 genes linked to VSC biosynthesis and 54 regulatory genes governing terpenoid production. In XJ, elevated accumulation of VSCs was mechanistically associated with the synergistic upregulation of glutamate-cysteine ligase (GSH), γ-glutamyltransferase (GGT), and flavin monooxygenase (FMO). High levels of VSCs precursors (e.g., S-allyl-L-cysteine sulfoxide) and transcriptional activation of these genes strongly correlated with the species-specific pungent odor profile. In DS, geranylgeranyl diphosphate synthase (GGPS) and farnesyl pyrophosphate synthase (FDPS) were identified as key regulators of terpenoid biosynthesis.

conclusionsThe present study expands our knowledge of the volatile metabolic profiles of the two Ferula species and lays the foundation for further studies on the regulatory mechanisms of Ferula quality.

Indexed as

FerulaOdorantsTranscriptomeVolatile Organic CompoundsGene Expression ProfilingGene Expression Regulation, PlantMetabolomicsSpecies SpecificitySulfur CompoundsTerpenesSulfur CompoundsTerpenesVolatile Organic CompoundsFerulaMetabolomeTerpenoidsTranscriptomeVolatile compoundsVolatile sulfur compounds

Identifiers

PMID40682024
PMCPMC12275395

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.