Evidence map›Paper›PMID 40681872›Full record

ArticleEMBO reports2025

Transcriptome-wide decoding the roles of aberrant splicing in melanoma MAPK-targeted resistance evolution.

Jing Yu, Xiujing He, Xueyan Wang, Chune Yu, Xian Jiang, Yanna Li, Xinyu Liu, Ya Luo, Xuemei Chen, Sisi Wu and 4 more

Abstract read
In one paragraph

Article in EMBO reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jing Yu *Institute of Breast Health Medicine, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University and Collaborative Innovation Center, 610041, Chengdu, Sichuan, China.
Xiujing He *Institute of Breast Health Medicine, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University and Collaborative Innovation Center, 610041, Chengdu, Sichuan, China.
Xueyan Wang *Institute of Breast Health Medicine, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University and Collaborative Innovation Center, 610041, Chengdu, Sichuan, China.
Chune Yu *State Key Laboratory of Systems Medicine for Cancer, Shanghai Cancer Institute, Renji Hospital, Shanghai Jiao Tong University School of Medicine, 200032, Shanghai, China.
Xian JiangInstitute of Breast Health Medicine, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University and Collaborative Innovation Center, 610041, Chengdu, Sichuan, China.
Yanna LiInstitute of Breast Health Medicine, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University and Collaborative Innovation Center, 610041, Chengdu, Sichuan, China.
Xinyu LiuInstitute of Breast Health Medicine, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University and Collaborative Innovation Center, 610041, Chengdu, Sichuan, China.
Ya LuoDepartment of Blood Transfusion, Laboratory Medicine Center, The Second Affiliated Hospital, Army Military Medical University, 400037, Chongqing, China.
Xuemei ChenCore Facilities of West China Hospital, Sichuan University, 610041, Chengdu, Sichuan, China.
Sisi WuCore Facilities of West China Hospital, Sichuan University, 610041, Chengdu, Sichuan, China.ORCID 0000-0002-3791-9534
Lu SiKey Laboratory of Carcinogenesis and Translational Research (Ministry of Education/Beijing), Department of Renal Cancer and Melanoma, Peking University Cancer Hospital & Institute, 100084, Beijing, China. silu15_silu@126.com.ORCID 0009-0005-9987-4019
Jing JingInstitute of Breast Health Medicine, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University and Collaborative Innovation Center, 610041, Chengdu, Sichuan, China. jingjing@wchscu.edu.cn.ORCID 0009-0000-1314-7835
Xuelei MaDepartment of Biotherapy, West China Hospital and State Key Laboratory of Biotherapy, Sichuan University, 610041, Chengdu, Sichuan, China. drmaxuelei@gmail.com.ORCID 0000-0002-9148-5001
Hubing ShiInstitute of Breast Health Medicine, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University and Collaborative Innovation Center, 610041, Chengdu, Sichuan, China. shihb@scu.edu.cn.ORCID 0000-0002-2926-3440

Funding

1.3.5 project for disciplines of excellence, West China Hospital, Sichuan University ZYGD23028Key Program of the Science and Technology Bureau of Sichuan 2021YFSY0007MOST | National Key Research and Development Program of China (NKPs) 2022YFA1207300 [2022YFA1207303]MOST | National Natural Science Foundation of China (NSFC) 81902792MOST | National Natural Science Foundation of China (NSFC) 82102492MOST | National Natural Science Foundation of China (NSFC) 82172634MOST | National Natural Science Foundation of China (NSFC) 82304527MOST | National Natural Science Foundation of China (NSFC) 82404682Post-doctoral Research Project, West China Hospital, Sichuan University 2024HXBH138Sichuan Science and Technology Program 2024NSFSC1725Sichuan Science and Technology Program 2024NSFSC1765the China Post-doctoral Science Foundation 2022M722129the China Post-doctoral Science Foundation 2023M742482the China Post-doctoral Science Foundation 2024M752260the China Postdoctoral Science Foundation under Grant Number GZC20241148
6 · The paper itself

Abstract

Drug resistance critically limits the long-term efficacy of MAPK-targeted therapy in melanoma. While resistance mechanisms at genetic, epigenetic, and transcriptional scales are well-documented, post-transcriptional splicing regulation remains poorly understood. By analyzing patient-matched pre-treatment and resistant melanoma biopsies, we uncover widespread alternative splicing alterations during therapy resistance. Splicing perturbations are most pronounced in MAPK and PI3K-AKT pathway genes. We identify a splicing switch of AKT2 from isoform 210 to 206 in 29.55% (13/44) of disease-progressive biopsies. This splicing switch induces AKT2 kinase hyperactivity by restoring the activated fragment A-loop. Functional validations confirm that AKT2-206 confers BRAF inhibitor resistance in melanoma cells by activating S6 kinase. Further, the splicing factor hnRNPK likely drives the splicing switch of AKT2 during acquired resistance. Our results not only provide insights into splicing-mediated regulation of drug resistance but also highlight the importance of alternative splicing isoforms as targets for clinical diagnosis and therapy.

Indexed as

Alternative SplicingDrug Resistance, NeoplasmMelanomaTranscriptomeCell Line, TumorGene Expression Regulation, NeoplasticHumansProtein Kinase InhibitorsProto-Oncogene Proteins B-rafProto-Oncogene Proteins c-aktProtein Kinase InhibitorsProto-Oncogene Proteins B-rafProto-Oncogene Proteins c-aktAKT2Alternative SplicingDrug ResistancehnRNPKMelanoma

Identifiers

PMID40681872
PMCPMC12373858

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.