Evidence map›Paper›PMID 40681681›Full record

ArticleAnnals of hematology2025

Distinct structural and numerical chromosome abnormalities determine the MYC status in diffuse large B-Cell lymphoma and help differentiate from Burkitt lymphoma: a cytogenetic data analysis using unsupervised and AI-driven prediction models.

Rolando García, Shankar Srinivasan, Mehta Shashi, Frederick Coffman, Prasad Koduru

Abstract read
In one paragraph

Article in Annals of hematology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rolando GarcíaDepartment of Pathology, UT Southwestern Medical Center, Dallas, TX, USA. rolando.garcia@utsouthwestern.edu.
Shankar SrinivasanDepartment of Health Informatics, Rutgers University- School of Health Professions, Piscataway, NJ, USA.
Mehta ShashiDepartment of Biomedical and Health Sciences, School of Health Professions, Rutgers University, Newark, NJ, USA.
Frederick CoffmanDepartment of Health Informatics, Rutgers University- School of Health Professions, Piscataway, NJ, USA.
Prasad KoduruDepartment of Pathology, UT Southwestern Medical Center, Dallas, TX, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aim of this study was to identify recurrent chromosome abnormalities (RCAs) to distinguish these entities and to test their specificities in a set of predictor models. The study analyzed publicly available cytogenetic data to construct models to predict DLBCL and BL. The Fisher Exact test (2-tail) was used to assess the significance of differences in the number of aberrations between groups, as well as to determine correlations between RCAs and the two entities. A p-value less than 0.05 was considered significant. Discrimination analysis was determined by the receiver operating curve (ROC). All analyses were performed using the R package. The SAS software package was used to develop a logistic regression model. Two subsequent supervised models were constructed using a larger dataset (n = 515) to confirm initial findings. A p-value < 0.05 was considered significant. Several RCAs were associated with DLBCL, including 1p-, 1q-, -2, + 3, -4, + 5, 6p gain, 6q-, + 7, -8, 9q-, -10/-15, -10/-14, + 11, +12, 14q-, 15q-, + 16, 16q-,17p-, + 18, 19p-, and 22q-. Of these, + 7, 15q-, + 16 and + 18 were more prevalent in MYC + DLBCL vs. BL, whereas 1q gain and 13q- were consistent with BL. The specificity of supervised models ranged from 90 to 100%, whereas the accuracy of the unsupervised logistic regression model was 85%. Our findings revealed unique RCAs that may be used in combination with model classifiers to augment diagnostic accuracy and help clinicians better manage these patients.

Indexed as

Burkitt LymphomaChromosome AberrationsLymphoma, Large B-Cell, DiffuseProto-Oncogene Proteins c-mycCytogenetic AnalysisDiagnosis, DifferentialFemaleHumansMaleMYC protein, humanProto-Oncogene Proteins c-mycBurkitt lymphomaChromosome abnormalitiesDiffuse large B-Cell lymphomaPrediction models

Identifiers

PMID40681681
PMCPMC12334441

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.