Evidence map›Paper›PMID 40679911›Full record

ArticleCell reports2025

Epistasis in the receptor-binding domain of contemporary H3N2 viruses that reverted to bind sialylated di-LacNAc repeats.

Ruonan Liang, Francesca Peccati, Niels L D Ponse, Elif Uslu, Annelies J H de Rooij, Alvin X Han, Geert-Jan Boons, Luca Unione, Robert P de Vries

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Loss of hemagglutination ability by H3N2 influenza A virus, subclade K.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Learning a viral protein's vocabulary.Nature ecology & evolution · 2026
    Article
  9. Article
  10. Article
  11. The Q226L mutation can convert a highly pathogenic H5 2.3.4.4e virus to bind human-type receptors.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Ruonan LiangDepartment of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Universiteitsweg 99, 3584CG Utrecht, the Netherlands.
Francesca PeccatiCICbioGUNE, Basque Research & Technology Alliance (BRTA), Bizkaia Technology Park, Building 800, Bizkaia, 48160 Derio, Spain; Ikerbasque, Basque Foundation for Science, 48013 Bilbao, Spain.
Niels L D PonseDepartment of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Universiteitsweg 99, 3584CG Utrecht, the Netherlands.
Elif UsluDepartment of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Universiteitsweg 99, 3584CG Utrecht, the Netherlands.
Annelies J H de RooijDepartment of Medical Microbiology & Infection Prevention, Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, the Netherlands.
Alvin X HanDepartment of Medical Microbiology & Infection Prevention, Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, the Netherlands.
Geert-Jan BoonsDepartment of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Universiteitsweg 99, 3584CG Utrecht, the Netherlands; Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA.
Luca UnioneCICbioGUNE, Basque Research & Technology Alliance (BRTA), Bizkaia Technology Park, Building 800, Bizkaia, 48160 Derio, Spain; Ikerbasque, Basque Foundation for Science, 48013 Bilbao, Spain.
Robert P de VriesDepartment of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Universiteitsweg 99, 3584CG Utrecht, the Netherlands. Electronic address: r.vries@uu.nl.

Funding

Automated chemo-enzymatic synthesis of N-glycans for host-pathogen interactionsR01AI165692 · NIAID · UNIVERSITY OF GEORGIA · PI BOONS, GEERT-JAN · 2022 to 2025
$2.2M
NIAID NIH HHS R01 AI165692
6 · The paper itself

Abstract

Since their introduction into humans, H3N2 influenza A viruses have evolved continuously to escape immunity through antigenic drift, driven by mutations in and around the receptor-binding site. Recently, these changes resulted in viruses that recognize elongated glycans, which are less abundant in the human respiratory tract, complicating vaccine strain propagation. This study employed ELISA, glycan arrays, tissue staining, flow cytometry, and hemagglutinin (HA) assays to demonstrate the molecular determinants of recent H3N2 viruses that regained recognition of shorter glycans. Mutations Y159N/T160I in contemporary strains replace Y159/T160, weakening receptor binding. However, this is compensated by Y195F in the 190-helix. These findings highlight epistasis across critical residues in the HA receptor-binding site, including the 130-loop, 150-loop, and 190-helix. Interestingly, a positive correlation exists between binding to an asymmetrical N-glycan and binding to human and ferret respiratory tract tissues. These results elucidate the epistatic nature of receptor-binding specificity during influenza A virus H3N2 evolution.

Indexed as

Epistasis, GeneticInfluenza A Virus, H3N2 SubtypeReceptors, VirusAnimalsBinding SitesDogsFerretsHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza, HumanMutationPolysaccharidesProtein BindingHemagglutinin Glycoproteins, Influenza VirusPolysaccharidesReceptors, VirusCP: MicrobiologyepistasisH3N2hemagglutinininfluenzaN-glycanreceptor bindingsialic acid

Identifiers

PMID40679911
PMCPMC12439434

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.