Evidence map›Paper›PMID 40679853›Full record

ArticleMicrobial genomics2025

ChiVariARIBA: a modular, editable workflow and database for characterising chitin gene variation in

Evan P Naughton, Matthew J Dorman

Abstract read
In one paragraph

Article in Microbial genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Evan P NaughtonSchool of Mathematical and Statistical Sciences, College of Science and Engineering, University of Galway, Galway, H91 TK33, Ireland.
Matthew J DormanSchool of Mathematical and Statistical Sciences, College of Science and Engineering, University of Galway, Galway, H91 TK33, Ireland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chitin is a highly abundant biopolymer of bioeconomic, biochemical and commercial importance. This carbohydrate is a source of nutrients for chitinolytic bacteria and can influence natural competence, surface adsorption and other fundamental aspects of prokaryote physiology. Bacterial enzymatic degradation of chitin is mediated by a well-studied set of hydrolytic enzymes, transcriptional regulators and carbohydrate transport proteins. Many of these gene products have been functionally characterized

Indexed as

ChitinDatabases, GeneticVibrioBacterial ProteinsComputational BiologyGenetic VariationGenome, BacterialGenomicsWorkflowBacterial ProteinsChitinARIBAbacterial genomicschitinchitin metabolismgene databasenatural competence

Identifiers

PMID40679853
PMCPMC12282291

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.