Evidence map›Paper›PMID 40679638›Full record

ReviewMicrobial ecology2025

Darkness to Discovery: A Comprehensive Mini-Review on Culturable and Non-Culturable Microbial Diversity from Deep Sea.

Abhay B Fulke, Nilkanth Sharma, Jayshree Nadekar

Abstract readReview
In one paragraph

Review in Microbial ecology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Abhay B FulkeMicrobiology Division, CSIR-National Institute of Oceanography (CSIR-NIO), Regional 5 Centre, Lokhandwala Road, Four Bungalows, Andheri (West), , Mumbai, 400053, Maharashtra, India. afulke@nio.res.in.
Nilkanth SharmaMicrobiology Division, CSIR-National Institute of Oceanography (CSIR-NIO), Regional 5 Centre, Lokhandwala Road, Four Bungalows, Andheri (West), , Mumbai, 400053, Maharashtra, India.
Jayshree NadekarMicrobiology Division, CSIR-National Institute of Oceanography (CSIR-NIO), Regional 5 Centre, Lokhandwala Road, Four Bungalows, Andheri (West), , Mumbai, 400053, Maharashtra, India.

Funding

National Institute of Oceanography, India OLP2009
6 · The paper itself

Abstract

Microorganisms are essential players in Earth's ecosystems, demonstrating remarkable adaptability to harsh conditions including arctic ice caps, deep-sea hydrothermal vents, and high-pressure oceanic zones. While the study of these extremophiles has long been constrained by challenges in culturing, recent advances in metagenomic techniques have enabled a deeper understanding of microbial diversity in these extreme habitats. This review explores both culturable and non-culturable microbial communities, focusing on the diverse strategies employed by microorganisms to thrive in harsh conditions, including high pressure, temperature, salinity, and nutrient limitations. Traditional cultivation methods often fail to capture the full spectrum of deep-sea microbiota due to the unique growth requirements of many organisms. In the omic era, however, microbial cultivation and the function of microbial resources are important. Non-culturable methods, like metagenomic studies and environmental DNA sequencing, have uncovered hitherto unknown microbial taxa and metabolic pathways, offering important new information on microbial ecology and biogeochemistry. The complex microbial interactions and adaptive methods that support these ecosystems are highlighted by case studies, including as studies on hydrothermal plumes and hadal deposits. The expanding significance of non-culturable techniques in microbial research is highlighted in this review, which also highlights how they might help us better understand microbial life in harsh conditions and how they may be used in biotechnology and environmental management.

Indexed as

BacteriaBiodiversityMicrobiotaSeawaterEcosystemHydrothermal VentsMetagenomicsOceans and SeasCulturableDeep seaMetagenomicsMicrobial diversityNon-culturable

Identifiers

PMID40679638
PMCPMC12274225

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.