Evidence map›Paper›PMID 40676590›Full record

ArticleGenome biology2025

HELLS is required for maintaining proper DNA modification at human satellite repeats.

Philine Guckelberger, Leah Haut, Rosaria Tornisiello, Helene Kretzmer, Alexander Meissner

Abstract read
In one paragraph

Article in Genome biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Philine GuckelbergerMax Planck Institute for Molecular Genetics, Berlin, Germany.ORCID http://orcid.org/0000-0002-1057-2518
Leah HautMax Planck Institute for Molecular Genetics, Berlin, Germany.
Rosaria TornisielloMax Planck Institute for Molecular Genetics, Berlin, Germany.ORCID http://orcid.org/0000-0002-6358-4934
Helene KretzmerMax Planck Institute for Molecular Genetics, Berlin, Germany. helene.kretzmer@hpi.de.ORCID http://orcid.org/0000-0002-0723-4980
Alexander MeissnerMax Planck Institute for Molecular Genetics, Berlin, Germany. meissner@molgen.mpg.de.ORCID http://orcid.org/0000-0001-8646-7469

Funding

European Research Council 101098178
6 · The paper itself

Abstract

DNA methylation regulation involves multi-layered chromatin interactions that require remodeling proteins like the helicase, lymphoid-specific (HELLS). Here, we generate HELLS and DNA methyltransferase 3A and B (DNMT3A/B) knockout human pluripotent stem cells and report telomere-to-telomere maps of whole genome bisulfite sequencing data combined with ATAC-sequencing. Disrupting HELLS induces a global loss of DNA methylation that is distinct from the DNMTs, in particular over peri/centromeric satellite repeats as defined in the telomere-to-telomere genome assembly. However, HELLS appears dispensable for local enhancer remodeling and the potential to differentiate into the three embryonic germ layers. Taken together, our results further clarify the genomic targets and role of HELLS in human cells.

Indexed as

DNA HelicasesDNA MethylationDNA, SatelliteDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3AHumansPluripotent Stem CellsTelomereDNA (Cytosine-5-)-MethyltransferasesDNA HelicasesDNA Methyltransferase 3ADNA, SatelliteDNMT3A protein, humanHELLS protein, humanCentromeresChromatin remodelingDNA methylationHELLSSatellite repeatsT2T

Identifiers

PMID40676590
PMCPMC12273238

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.