Evidence map›Paper›PMID 40676581›Full record

ArticleBMC plant biology2025

Genome-Wide identification and expression profiles of the WRKY transcription factor family in Artocarpus nanchuanensis.

Xiao Zhang, Changying Xia, Shiqi You, Yunli Chen, Youwei Zuo, Huan Zhang, Wenqiao Li, Zhe Zhang, Hongping Deng

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In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1citing papers in PubMed
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3 · Its place in the literature

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1 citing paper in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Xiao Zhang *School of Life Sciences, Southwest University, Chongqing, China.
Changying Xia *School of Life Sciences, Southwest University, Chongqing, China.
Shiqi YouSchool of Life Sciences, Southwest University, Chongqing, China.
Yunli ChenSchool of Life Sciences, Southwest University, Chongqing, China.
Youwei ZuoSchool of Life Sciences, Southwest University, Chongqing, China.
Huan ZhangSchool of Life Sciences, Southwest University, Chongqing, China.
Wenqiao LiSchool of Life Sciences, Southwest University, Chongqing, China.
Zhe ZhangSchool of Life Sciences, Southwest University, Chongqing, China.
Hongping DengSchool of Life Sciences, Southwest University, Chongqing, China. denghp@swu.edu.cn.

Funding

the Central forestry reform and development fund - Chengdu-Chongqing economic circle Joint Protection National Key Protected Wild Plants Rescue and Protection zlg2022-cq20220907the Central forestry reform and development fund - Representative National Key Protected Wild Plants Rescue and Protection in the Upper Reaches of the Yangtze River zlg2021- cq20211210
6 · The paper itself

Abstract

backgroundAs one of the largest families of transcription factors (TFs), the WRKY gene family plays a significant role in plant growth, development, and response to hormone and environmental stress. Currently, there is no systematic analysis of the WRKY gene family in Artocarpus nanchuanensis.

resultsTo explore its evolutionary mechanism and potential function, we performed a comprehensive analysis. A total of 113 AnWRKYs were identified, and 109 were mapped onto 28 chromosomes. These genes could be classified into 3 groups (Group I, Group IIa-IIe, Group III) based on phylogenetic analysis and the sequence characteristics of the AnWRKY domain. Syntenic analyses revealed 4 pairs of tandem repeats and 123 pairs of large fragment repeats. Furthermore, the expression profiles of AnWRKYs in roots, stems, and leaves showed that AnWRKYs had different spatial expression patterns. AnWRKY2, AnWRKY14, AnWRKY46, AnWRKY55, and AnWRKY105 may play important roles in the response to abiotic stress. In addition, subcellular localization analysis indicated that AnWRKY55 was localized in the nucleus.

conclusionsThis study is the first to report the identification and characterization of AnWRKYs in A. nanchuanensis and provides an important basis for future comprehensive evolutionary and functional analyses of AnWRKYs in A. nanchuanensis.

Indexed as

ArtocarpusGenome, PlantPlant ProteinsTranscription FactorsGene Expression ProfilingGene Expression Regulation, PlantMultigene FamilyPhylogenyPlant ProteinsTranscription FactorsAbiotic stressArtocarpus nanchuanensisExpression profileWRKY gene family

Identifiers

PMID40676581
PMCPMC12273415

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