Evidence map›Paper›PMID 40675771›Full record

ArticleThe European respiratory journal2025

Integrated spatial and single-cell transcriptomics reveal PAK kinase as a therapeutic target in fibroblastic foci and dense fibrosis of idiopathic pulmonary fibrosis.

Naoaki Watanabe, Masahiro Yoshida, Yuta Hirano, Shota Fujimoto, Sachi Matsubayashi, Takashi Ishiguro, Nobumasa Takahashi, Yoshihiko Shimizu, Noboru Takayanagi, Yoshinori Kawabata and 7 more

Abstract read
In one paragraph

Article in The European respiratory journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Naoaki WatanabeDivision of Respiratory Diseases, Department of Internal Medicine, The Jikei University School of Medicine, Tokyo, Japan.
Masahiro YoshidaDivision of Respiratory Diseases, Department of Internal Medicine, The Jikei University School of Medicine, Tokyo, Japan.ORCID https://orcid.org/0000-0002-3521-5322
Yuta HiranoDivision of Respiratory Diseases, Department of Internal Medicine, The Jikei University School of Medicine, Tokyo, Japan.
Shota FujimotoDivision of Respiratory Diseases, Department of Internal Medicine, The Jikei University School of Medicine, Tokyo, Japan.
Sachi MatsubayashiDivision of Respiratory Diseases, Department of Internal Medicine, The Jikei University School of Medicine, Tokyo, Japan.
Takashi IshiguroDepartment of Respiratory Medicine, Saitama Cardiovascular and Respiratory Center, Saitama, Japan.ORCID https://orcid.org/0000-0001-6004-1769
Nobumasa TakahashiDepartment of Thoracic Surgery, Saitama Cardiovascular and Respiratory Center, Saitama, Japan.
Yoshihiko ShimizuDepartment of Pathology, Saitama Cardiovascular and Respiratory Center, Saitama, Japan.
Noboru TakayanagiDepartment of Respiratory Medicine, Saitama Cardiovascular and Respiratory Center, Saitama, Japan.
Yoshinori KawabataDepartment of Pathology, Saitama Cardiovascular and Respiratory Center, Saitama, Japan.
Yutaro MoriDivision of Cancer Differentiation, National Cancer Center Research Institute, Tokyo, Japan.
Koji OkamotoDivision of Cancer Differentiation, National Cancer Center Research Institute, Tokyo, Japan.
Shunsuke MinagawaDivision of Respiratory Diseases, Department of Internal Medicine, The Jikei University School of Medicine, Tokyo, Japan.
Kazuyoshi KuwanoDivision of Respiratory Diseases, Department of Internal Medicine, The Jikei University School of Medicine, Tokyo, Japan.
Jun ArayaDivision of Respiratory Diseases, Department of Internal Medicine, The Jikei University School of Medicine, Tokyo, Japan.
Yusuke YamamotoLaboratory of Integrative Oncology, National Cancer Center Research Institute, Tokyo, Japan.
Yu FujitaDivision of Respiratory Diseases, Department of Internal Medicine, The Jikei University School of Medicine, Tokyo, Japan yuugot@jikei.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis (IPF) is a fatal interstitial lung disease characterised by progressive fibrosis of lung parenchyma. The histopathology of IPF exhibits temporal and spatial heterogeneity, including immature fibroblastic foci (FF) and densely collagenised fibrosis. FF serve as dynamic niches of pro-fibrotic fibroblasts and play a pivotal role in fibrosis progression and transition into dense fibrosis (DF). Here, we integrated single-cell RNA sequencing (scRNA-seq) with spatial transcriptomics to elucidate cellular heterogeneity and the novel cell type involved not only in FF formation, but also in DF development. We identified a novel myofibroblast population,

Indexed as

FibroblastsIdiopathic Pulmonary Fibrosisp21-Activated KinasesAnimalsBleomycinCell DifferentiationDisease Models, AnimalGene Expression ProfilingHumansLungMaleMiceMice, Inbred C57BLMyofibroblastsSingle-Cell AnalysisTranscriptomeBleomycinp21-Activated KinasesWnt-5a Protein

Identifiers

PMID40675771
PMCPMC12501429

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.