Evidence map›Paper›PMID 40674413›Full record

ArticlePLoS computational biology2025

Modular, focused data science education improves biomedical learners' abilities: A study of the Data and Analytics for Research Training (DART) program.

Rose Hartman, Karen Joy Payton, Rose Franzen, Meredith Lee, Elizabeth Drellich, Ali Shokoufandeh, Jeffrey Pennington

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rose HartmanDepartment of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0001-5386-5831
Karen Joy PaytonDepartment of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.ORCID 0009-0008-0198-8125
Rose FranzenDepartment of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0001-5750-6473
Meredith LeeDepartment of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Elizabeth DrellichDepartment of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.ORCID 0009-0007-4262-454X
Ali ShokoufandehCollege of Computing & Informatics, Drexel University, Philadelphia, Pennsylvania, United States of America.
Jeffrey PenningtonDepartment of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.

Funding

Education Pathways for Biomedical Data Science (R25)R25GM141501 · NIGMS · CHILDREN'S HOSP OF PHILADELPHIA · PI PENNINGTON, JEFFREY WAYLAND · 2021 to 2023
$259k
NIGMS NIH HHS R25 GM141501
6 · The paper itself

Abstract

The increasing availability of big data and adoption of sophisticated computational techniques in biomedical research has exciting implications for our scientific understanding of human health. However, researchers report struggling to find data science education that meets their needs, despite the fact that many training programs and online resources exist. There is a lack of evidence on the strengths and weaknesses of various training options, making selecting an educational path daunting. We created a new data science training program focused on rigorous, reproducible methods for biomedical research, making use of tightly scoped modular content that can be flexibly arranged to provide a curriculum tailored to a researcher's specific needs and skill level. Moreover, we ran a study testing the program's effectiveness, providing not only another option for data science training but also a model for collecting and sharing relevant data on data science education programs. We ran two waves of research participants, adjusting our materials in between to improve both the training program and our research design. For both waves, we pre-registered hypotheses that learners' self-reported data science ability and level of agreement with important tenets of open science would increase over the course of the program. Indeed, learners showed significant improvement in data science ability (Wave 1: t(47) = 10.18, p < .001, Wave 2: t(238) = 17.12, p < .001) and greater agreement with open science values (Wave 1: t(47) = 3.56, p < .001, Wave 2: t(238) = 7.95, p < .001). Follow up analyses underscore the robustness of improvement in data science ability. The improvement in open science values was more moderate and was significant only in some of our pre-registered hypothesis tests, likely due to a ceiling effect as most learners reported high agreement with open science values at pretest.

Indexed as

Biomedical ResearchData ScienceComputational BiologyCurriculumHumansLearning

Identifiers

PMID40674413
PMCPMC12286386

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.