Evidence map›Paper›PMID 40673688›Full record

ArticleJournal of cellular and molecular medicine2025

Causal Relationships Between Dietary Habits, Gut Microbiota, Metabolites, Serum Proteins and Laboratory Biomarkers in Kidney Stone Formation: A Mendelian Randomisation Study.

Rongjiang Wang, Mengting Jiang, Zhaojun Li, Changbao Xu, Hui Liang, Junwen Shen, Huan Zhong

Abstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rongjiang WangThe Department of Urology, The First Afliated Hospital of Huzhou Normal College, Zhejiang, China.ORCID 0000-0002-3955-5527
Mengting JiangThe Department of Urology, The First Afliated Hospital of Huzhou Normal College, Zhejiang, China.
Zhaojun LiThe Department of Urology, The First Afliated Hospital of Huzhou Normal College, Zhejiang, China.
Changbao XuThe Department of Urology, The Second Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan, China.
Hui LiangThe Department of Urology, Xinchang County Traditional Chinese Medicine Hospital, Zhejiang, China.
Junwen ShenThe Department of Urology, The First Afliated Hospital of Huzhou Normal College, Zhejiang, China.ORCID 0000-0001-9077-6299
Huan ZhongThe Department of Urology, The First Afliated Hospital of Huzhou Normal College, Zhejiang, China.

Funding

Public Welfare Projects of the Huzhou Science and Technology Bureau 2021GY17Zhejiang Provincial Natural Science Foundation of China LGF22H160022
6 · The paper itself

Abstract

This study aimed to elucidate the causal interplay between dietary habits, gut microbiota composition, circulating metabolites, serum proteins, laboratory biomarkers and kidney stone formation, employing Mendelian randomisation (MR) to identify potential mediators. A rigorous two-sample MR framework was employed to assess the causal associations between kidney stones and a spectrum of predisposing factors. This encompassed dietary patterns, gut microbiota profiles, circulating metabolic intermediates, serum proteins and laboratory test indicators. Significant associations were further analysed using mediation analysis to uncover indirect pathways. Initial significance was determined at p < 0.05, followed by the implementation of False Discovery Rate correction (FDR p < 0.05) to reduce the likelihood of false positives due to multiple comparisons. Direct causal relationships were established between kidney stones and 9 dietary factors (including fruit, alcohol, coffee intake), 11 gut microbiota types, 8 metabolites, 12 plasma proteins and 8 laboratory indicators (CRE, EGFR, CA, UAHDL, APOA, CYS and URNA). Notably, nine mediation pathways were discovered. These pathways reveal the indirect effects of dietary habits on kidney stone formation mediated through laboratory biomarkers. Specifically, five dietary habits-alcohol, coffee, fruit, champagne/white wine and dried fruit consumption-were shown to mediate through seven key factors: APOA, CA, CYS, EGFR, HDL, UA and URNA. Six of these mediations were positive, indicating facilitatory roles, while three exhibited negative mediation, suggestive of competitive inhibition in the diet-kidney stone causal pathway. This MR study underscored the causal links between dietary habits, gut microbiota composition, circulating metabolites, serum proteins, laboratory biomarkers and kidney stone development, shedding light on potential mediators including seven laboratory biomarkers.

Indexed as

BiomarkersBlood ProteinsFeeding BehaviorGastrointestinal MicrobiomeKidney CalculiMendelian Randomization AnalysisDietFemaleHumansMaleBiomarkersBlood Proteinsdietary habitsgut microbiotakidney stoneMendelian randomisationmetabolites and biomarkers

Identifiers

PMID40673688
PMCPMC12268965

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.