Evidence map›Paper›PMID 40672867›Full record

ArticleISME communications2025

Gradual loss of mobile genetic elements in

Anne-Gaelle Ranc, Patricia Martins Simões, Benjamin Youenou, Camille Kolenda, Céline Dupieux, Frédéric Laurent, Jean Philippe Rasigade, Anne Tristan, François Vandenesch

Abstract read
In one paragraph

Article in ISME communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Anne-Gaelle RancCentre National de Référence des Staphylocoques, Institut des agents infectieux, Hospices Civils de Lyon, F-69004 Lyon, France.ORCID https://orcid.org/0000-0002-8120-9775
Patricia Martins SimõesCentre National de Référence des Staphylocoques, Institut des agents infectieux, Hospices Civils de Lyon, F-69004 Lyon, France.
Benjamin YouenouCentre National de Référence des Staphylocoques, Institut des agents infectieux, Hospices Civils de Lyon, F-69004 Lyon, France.ORCID https://orcid.org/0000-0001-6282-6498
Camille KolendaCentre National de Référence des Staphylocoques, Institut des agents infectieux, Hospices Civils de Lyon, F-69004 Lyon, France.ORCID https://orcid.org/0000-0002-3716-0521
Céline DupieuxCentre National de Référence des Staphylocoques, Institut des agents infectieux, Hospices Civils de Lyon, F-69004 Lyon, France.ORCID https://orcid.org/0000-0001-7388-4087
Frédéric LaurentCentre National de Référence des Staphylocoques, Institut des agents infectieux, Hospices Civils de Lyon, F-69004 Lyon, France.ORCID https://orcid.org/0000-0003-0609-9091
Jean Philippe RasigadeCIRI, Center for Integrative Research in Infectious diseases and Immunology, Université de Lyon, Inserm U1111, Université Claude Bernard Lyon 1, CNRS UMR5308, ENS de Lyon, F-69007 Lyon, France.ORCID https://orcid.org/0000-0002-8264-0452
Anne TristanCentre National de Référence des Staphylocoques, Institut des agents infectieux, Hospices Civils de Lyon, F-69004 Lyon, France.ORCID https://orcid.org/0000-0001-9471-2655
François VandeneschCentre National de Référence des Staphylocoques, Institut des agents infectieux, Hospices Civils de Lyon, F-69004 Lyon, France.ORCID https://orcid.org/0000-0001-9412-7106

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our French National Reference Centre for Staphylococci was requested to determine the epidemiological link between 19 methicillin-susceptible/resistant Staphylococcus aureus (MSSA/MRSA) isolates obtained from patients and a healthcare worker in a long-term care hospital, following the death of a nurse from pneumonia presumed to be associated with the drainage of a patient with an active skin infection. Whole genome sequencing was performed on all isolates to characterize their virulome, resistome, and phylogenetic relationships. Phylogenetic analysis revealed that 12 isolates belonged to the North American USA300 lineage, which is the predominant MRSA in North America but is less prevalent in Europe. USA300 strains are typically described as belonging to the clonal complex 8 (CC8) and possessing several mobile genetic elements (MGEs): the pathogenicity island SaPI5, the PVL-encoding bacteriophage ϕSa2USA, the staphylococcal chromosomal cassette

Indexed as

Staphylococcus aureusmobile genetic elementsUSA300 lineage

Identifiers

PMID40672867
PMCPMC12265888

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.