Evidence map›Paper›PMID 40667370›Full record

ArticlebioRxiv : the preprint server for biology2025

Ecosystems as adaptive living circuits.

Ankit Dhanuka, Avi I Flamholz, Arvind Murugan, Akshit Goyal

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ankit DhanukaNational Centre for Biological Sciences-TIFR, Bengaluru 560065.
Avi I FlamholzThe Laboratory of Environmental Microbiology, The Rockefeller University, New York NY 10065.ORCID 0000-0002-9278-5479
Arvind MuruganDepartment of Physics, University of Chicago, Chicago, IL 60637.ORCID 0000-0001-5464-917X
Akshit GoyalInternational Centre for Theoretical Sciences, Tata Institute of Fundamental Research, Bengaluru 560089.ORCID 0000-0002-9425-8269

Funding

Revealing mechanisms of specificity and adaptability in molecular information processing through data-driven modelsR35GM151211 · NIGMS · UNIVERSITY OF CHICAGO · PI Arvind Murugan · 2023 to 2026
$1.5M
NIGMS NIH HHS R35 GM151211
6 · The paper itself

Abstract

Unlike many physical nonequilibrium systems, in biological systems, the coupling to external energy sources is not a fixed parameter but adaptively controlled by the system itself. We do not have theoretical frameworks that allow for such adaptability. As a result, we cannot understand emergent behavior in living systems where structure formation and non-equilibrium drive coevolve. Here, using ecosystems as a model of adaptive systems, we develop a framework of living circuits whose architecture changes adaptively with the energy dissipated in each circuit edge. We find that unlike traditional nonequilibrium systems, living circuits exhibit a phase transition from equilibrium death to a nonequilibrium dissipative state beyond a critical driving potential. This transition emerges through a feedback mechanism that saves the weakest edges by routing dissipation through them, even though the adaptive rule locally rewards the strongest dissipating edges. Despite lacking any global optimization principle, living circuits achieve near-maximal dissipation, with higher drive promoting more complex circuits. Our work establishes ecosystems as paradigmatic examples of living circuits whose structure and dissipation are tuned through local adaptive rules.

Identifiers

PMID40667370
PMCPMC12262599

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.